Pinned Repositories
allpath_ec
biocode
Bioinformatics code libraries and scripts
Bioinformatics_Blogs
Blog bioinformatics
Bionano_hybrid_na12878
Circos
GenomeAlign
Intron
RelocaTE2
RelocaTE2
Scripts
StructureVariation
JinfengChen's Repositories
JinfengChen/Scripts
JinfengChen/RelocaTE2
RelocaTE2
JinfengChen/Bioinformatics_Blogs
Blog bioinformatics
JinfengChen/UCR_scripts
JinfengChen/assign
JinfengChen/awesome-python-applications
💿 Free software that works great, which also happens to be open-source Python.
JinfengChen/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
JinfengChen/Canopy
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.
JinfengChen/CNT-MD
Software for inferring the copy-number profiles of tumor clones and their evolution from fractional copy numbers obtained from multi-sample bulk sequencing data.
JinfengChen/ComplexHeatmap
Make Complex Heatmaps
JinfengChen/docker2singularity
A docker image for converting docker images to singularity images.
JinfengChen/Docker_Container
JinfengChen/fairchild
JinfengChen/huxpro.github.io
My Blog / Jekyll Themes / PWA
JinfengChen/ITH_TCGA
JinfengChen/jekyll-theme-chirpy
A Jekyll theme with responsive web design that focuses on text presentation.
JinfengChen/JinfengChen.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
JinfengChen/MEA
JinfengChen/mscaffolder
A comparative genome scaffolding tool
JinfengChen/multimodal-scRNA-seq
Figure depicting the breadth of multimodal scRNA-seq technologies
JinfengChen/pb-assembly
PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
JinfengChen/Primer3
JinfengChen/pwgs_snakemake
Snakemake pipeline for running PhyloWGS on NIH Biowulf Cluster
JinfengChen/smchet-challenge
Data related to the ICGC-TCGA DREAM Somatic Mutation Calling - Tumour Heterogeneity Challenge.
JinfengChen/stanford-cs-229-machine-learning
VIP cheatsheets for Stanford's CS 229 Machine Learning
JinfengChen/tnbc_scrnaseq
JinfengChen/Transposon_brad
JinfengChen/treemix_workflow
JinfengChen/vartrix
Single-Cell Genotyping Tool
JinfengChen/velocyto.R
Modified version of velocyto.R to export arrow coordinate without setting returndetails to True