Pinned Repositories
ACGTrie
A custom Numpy Trie for storing counts of sequences
ASCIIGenome
Text Only Genome Viewer!
bambomb.py
BAM file fuzzer
log.bio
Log command line events to a graph database :)
metaflagstat
Read count statistics for one or more sam/bam files in an easy to use/easy to understand format. Outputs HTML.
pybam
Very simple, pure python, BAM file reader
SeQC
SQL databases from BAM/SAM files with a focus on QC.
uq
Encode FASTQ files to be much smaller, both compressed and uncompressed.
JohnLonginotto's Repositories
JohnLonginotto/pybam
Very simple, pure python, BAM file reader
JohnLonginotto/log.bio
Log command line events to a graph database :)
JohnLonginotto/ACGTrie
A custom Numpy Trie for storing counts of sequences
JohnLonginotto/uq
Encode FASTQ files to be much smaller, both compressed and uncompressed.
JohnLonginotto/SeQC
SQL databases from BAM/SAM files with a focus on QC.
JohnLonginotto/ASCIIGenome
Text Only Genome Viewer!
JohnLonginotto/bambomb.py
BAM file fuzzer
JohnLonginotto/metaflagstat
Read count statistics for one or more sam/bam files in an easy to use/easy to understand format. Outputs HTML.
JohnLonginotto/d3-work
JohnLonginotto/deepTools
Tools to process and analyze deep sequencing data.