JohnRRptyhh/TeachingDemos

Bioinformatics related demos and tutorials using the R programming language

Teaching Demos

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Bioinformatics related demos and tutorials using the R programming language.

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Courses

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see all courses

• R programming for Data Science - a beginner's guide

• Network mapping 101

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Blog

• Creative Data Science Blog

• R programming, bioinformatics and data visualization

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Software

• CDS

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R Code Examples and More

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Data Analysis Examples

• Metabolomic and Proteomic Data Analysis 2015

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Data Wrangling

• Data wrangling for Data Science

• dplyr tutorial: verbs and split-apply

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Statistical Analysis

• Covariate Adjustment

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Principal Components Analysis (PCA)

• PCA for data exploration

• PCA and scores visualization on custom data (fast and simple)

• PCA on mtcars (fast and simple)

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PLS

• Partial Least Squares (PLS) (fast and simple)

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Predictive Modeling

• O-PLS Example (04/08/15)

• O-PLS-DA compared to Random Forest (updated 11/7/15)

• Comparing single to multiple Y models

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Database query and translation

• Translating Between Chemical Identifiers (intermediate)

• CTSgetR

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Network Visualizations

• Network mapping 101

• Building Biochemical and Chemical Similarity Networks (advanced)

• KEGG Pathway Visualization (genes, proteins and metabolites)

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Miscellaneous

• Summer 2014 Metabolomic Data Analysis Workshop

• Winter 2014 Metabolomic Data Analysis Workshop

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