Joon-Klaps

bioconda-recipes

Conda recipes for the bioconda channel.

configs

Config files used to define parameters specific to compute environments at different Institutions

dummypipe

ecv-baitcheck

ECV-Lab-KULeuven.github.io

Joon-Klaps

kaiju

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

LabFileChecker

lasvphylo

An nextflow pipeline for making LASV alignments

viralgenie

Detect iSNV and construct whole viral genomes from metagenomic samples

Joon-Klaps/viralgenie

Detect iSNV and construct whole viral genomes from metagenomic samples

Joon-Klaps/bioconda-recipes

Conda recipes for the bioconda channel.

Joon-Klaps/configs

Config files used to define parameters specific to compute environments at different Institutions

Joon-Klaps/dummypipe

Joon-Klaps/ecv-baitcheck

Joon-Klaps/ECV-Lab-KULeuven.github.io

Joon-Klaps/Joon-Klaps

Joon-Klaps/kaiju

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

Joon-Klaps/LabFileChecker

Joon-Klaps/lasvphylo

An nextflow pipeline for making LASV alignments

Joon-Klaps/modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

Joon-Klaps/MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

Joon-Klaps/suppl_bacteroides_fragilis

Supplementary information with the article 'Large-scale genomic characterisation of Bacteroides fragilis reveals multiple functionally divergent lineages and a distinct species.'

Joon-Klaps/multi-package-containers

Testing building mulled containers for multi-requirement tools.

Joon-Klaps/nextclade_data

Datasets for https://github.com/nextstrain/nextclade

Joon-Klaps/nextcloud_share_url_downloader

Download files from and list content of NextCloud (password protected) share directly from the command line without needing a webbrowser.

Joon-Klaps/Nextflow_sandbox

A playground to explore how to implement things in Nextflow and nf-core

Joon-Klaps/nosoi

Nosoi is a flexible agent-based stochastic transmission chain/epidemiological simulator

Joon-Klaps/phageannotator

Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.

Joon-Klaps/test-datasets

Test data to be used for automated testing with the nf-core pipelines

Joon-Klaps/tools

Python package with helper tools for the nf-core community.

Joon-Klaps/viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

Joon-Klaps/website-nf-core

Code and files for the main nf-core website.