Pinned Repositories
Attention-Gated-Networks
Use of Attention Gates in a Convolutional Neural Network / Medical Image Classification and Segmentation
ATTinyCore
Arduino core for ATtiny 1634, 828, x313, x4, x41, x5, x61, x7 and x8
cornerstone3D
Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.
ExtensionsIndex
Slicer extensions index
nrrdify
DICOM conversion script to check and sort DICOM slices prior to conversion using SimpleITK
pyradiomics
Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks.
remote_kernel
Pure-python package to start and connect to IPyKernels running on remote server via SSH
SlicerCaseIterator
Simple Scripted Module to batch process patients in 3D Slicer
SSH.NET
SSH.NET is a Secure Shell (SSH) library for .NET, optimized for parallelism.
torchsample
High-Level Training, Data Augmentation, and Utilities for Pytorch
JoostJM's Repositories
JoostJM/SlicerCaseIterator
Simple Scripted Module to batch process patients in 3D Slicer
JoostJM/remote_kernel
Pure-python package to start and connect to IPyKernels running on remote server via SSH
JoostJM/nrrdify
DICOM conversion script to check and sort DICOM slices prior to conversion using SimpleITK
JoostJM/pyradiomics
Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks.
JoostJM/torchsample
High-Level Training, Data Augmentation, and Utilities for Pytorch
JoostJM/nnUNet
JoostJM/SSH.NET
SSH.NET is a Secure Shell (SSH) library for .NET, optimized for parallelism.
JoostJM/Attention-Gated-Networks
Use of Attention Gates in a Convolutional Neural Network / Medical Image Classification and Segmentation
JoostJM/ATTinyCore
Arduino core for ATtiny 1634, 828, x313, x4, x41, x5, x61, x7 and x8
JoostJM/cornerstone3D
Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.
JoostJM/ExtensionsIndex
Slicer extensions index
JoostJM/fo-dicom
Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity
JoostJM/gatewaye
JoostJM/mifs
Parallelized Mutual Information based Feature Selection module.
JoostJM/lib_nrf24
Python library for NRF24L01+ Transceivers
JoostJM/MultiVolumeImporter
A 3D Slicer module for to support import of multi-volume data from non-DICOM sources, and provide plugin for importing such data from images saved in DICOM.
JoostJM/nrrdify_suv
Expansion to nrrdify, adding conversion to SUV values for PET Dicom
JoostJM/OrthancForward
Python Script to forward first slice of new DICOM series on an Orthanc server
JoostJM/pyradiomics_OLD
JoostJM/RF24
OSI Layer 2 driver for nRF24L01 on Arduino & Raspberry Pi/Linux Devices
JoostJM/Viewers
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages