JordyCoolen
PhD candidate, MSc Bioinformatician, Microbial Genomics
RadboudUMCNijmegen, The Netherlands
Pinned Repositories
16S_rcPCR
Not working repository
18S-CYP51A_RC-PCR
Measure amplicon RC-PCR depth
BasicPhylo
Is a tool to place WGS data of a Mycobacteria sample into a general Mycobacteria phylogeny.
Binning
Use for bayesian integration studies. To optimize integration with use of continuous data measurements of each dataset needs to be grouped in bins based on their value compared to the positive predictive geneset and/or the negative predictive geneset
easyseq_covid19
Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Genome Sequencing kit.
hombaampC
Homoplasy-based analysis on FOX resistant ESBL negative Escherichia coli.
home
Github pages
MyCodentifier
Nextflow pipeline to identify TB and NTM species from NGS data.
r-build-package
To update install and build R packages
R2GSCF
R client to connect to GSCF
JordyCoolen's Repositories
JordyCoolen/easyseq_covid19
Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Genome Sequencing kit.
JordyCoolen/16S_rcPCR
Not working repository
JordyCoolen/18S-CYP51A_RC-PCR
Measure amplicon RC-PCR depth
JordyCoolen/BasicPhylo
Is a tool to place WGS data of a Mycobacteria sample into a general Mycobacteria phylogeny.
JordyCoolen/Binning
Use for bayesian integration studies. To optimize integration with use of continuous data measurements of each dataset needs to be grouped in bins based on their value compared to the positive predictive geneset and/or the negative predictive geneset
JordyCoolen/hombaampC
Homoplasy-based analysis on FOX resistant ESBL negative Escherichia coli.
JordyCoolen/home
Github pages
JordyCoolen/MyCodentifier
Nextflow pipeline to identify TB and NTM species from NGS data.
JordyCoolen/r-build-package
To update install and build R packages
JordyCoolen/R2GSCF
R client to connect to GSCF
JordyCoolen/RC-PCR_CLASSIFIER
Reverse Complement PCR (RC-PCR_ Classification pipeline.
JordyCoolen/SIGBIO-proficiencytest
this repo contains all template sheets that were used in the proficiency test for WGS outbreaks
JordyCoolen/webIlluminaNormalization
Pipeline and Web-Interface for Illumina normalization