Pinned Repositories
3D-Unet--Tensorflow
3D Unet for Isointense Infant Brain Image Segmentation
3DFasterRCNN_LungNoduleDetector
3dgcn
Convolution in the Cloud: Learning Deformable Kernels in 3D Graph Convolution Networks for Point Cloud Analysis
adaptive_color_deconvolution
adaptive color deconvolution for paper "Zheng et al., CMPB, 2019"
alphafold_pytorch
An implementation of the DeepMind's AlphaFold based on PyTorch for research
awesome-spider
爬虫集合
BigGAN-Generator-Pretrained-Pytorch
Pytorch implementation of BigGAN Generator with pretrained weights
Blog
The project in my blog.
ProteinMPNN
Code for the ProteinMPNN paper
zetadesign
JoreyYan's Repositories
JoreyYan/zetadesign
JoreyYan/ProteinMPNN
Code for the ProteinMPNN paper
JoreyYan/ddpm-proteins
A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms
JoreyYan/DLPacker
DLPacker
JoreyYan/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
JoreyYan/GeoPPI
JoreyYan/ghost
JoreyYan/ghost2
JoreyYan/Graphormer
Graphormer is a deep learning package that allows researchers and developers to train custom models for molecule modeling tasks. It aims to accelerate the research and application in AI for molecule science, such as material design, drug discovery, etc.
JoreyYan/graphtransformer
Graph Transformer Architecture. Source code for "A Generalization of Transformer Networks to Graphs", DLG-AAAI'21.
JoreyYan/gvp-pytorch
Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure
JoreyYan/HowToCook
程序员在家做饭方法指南。
JoreyYan/learned-triangulation
Source code for "PointTriNet: Learned Triangulation of 3D Point Sets", by Nicholas Sharp and Maks Ovsjanikov at ECCV 2020
JoreyYan/master
JoreyYan/meaningful-protein-representations
JoreyYan/MeshCNN
Convolutional Neural Network for 3D meshes in PyTorch
JoreyYan/min-dalle
min(DALL·E) is a fast, minimal port of DALL·E Mini to PyTorch
JoreyYan/PAConv
(CVPR 2021) PAConv: Position Adaptive Convolution with Dynamic Kernel Assembling on Point Clouds
JoreyYan/PaddleHelix
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
JoreyYan/Point-BERT
[CVPR 2022] Pre-Training 3D Point Cloud Transformers with Masked Point Modeling
JoreyYan/point2mesh
Reconstruct Watertight Meshes from Point Clouds [SIGGRAPH 2020]
JoreyYan/pointMLP-pytorch
[ICLR 2022 poster] Official PyTorch implementation of "Rethinking Network Design and Local Geometry in Point Cloud: A Simple Residual MLP Framework"
JoreyYan/ProFOLD
A protein 3D structure prediction application
JoreyYan/protein_seq_des
Code for our paper "Protein sequence design with a learned potential"
JoreyYan/Pymol-script-repo
Collected scripts for Pymol
JoreyYan/rasp
JoreyYan/RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
JoreyYan/se3_diffusion
Implementation for SE(3) diffusion model with application to protein backbone generation
JoreyYan/sidechainnet
An all-atom protein structure dataset for machine learning.
JoreyYan/stylegan2-pytorch
Implementation of Analyzing and Improving the Image Quality of StyleGAN (StyleGAN 2) in PyTorch