JorgensenD
Postdoc working on non-polio enteroviruses @mrc-ide. Primarily work with sequence data, phylogenetic and phylodynamic modelling.
@mrc-ide London, UK
Pinned Repositories
BEAST2_M2
BEAST 2.6 code for apple silicon java
BEAST_CLUSTER
rundown of how to run PhyDyn on the Imperial HPC cluster
coursepage
Course page for RECON MSF course April 2021
D68_fitness
Investigating fitness dynamics of EV-D68 clades
jorgensend.github.io
Pakistan-workshop-site
Workshop demo site, using R Markdown. Bare-bones version.
PhD_thesis
Code related to my PhD thesis
Phylonium_cluster
build and use phylonium on imperial hpc
sarscov2_phylo_pipeline
Pipeline and example files to replicate sarscov2phylodynamics.org blog post plots
SARSCOV2_tree
ggtree plot with continents from gisaid data
JorgensenD's Repositories
JorgensenD/BEAST_CLUSTER
rundown of how to run PhyDyn on the Imperial HPC cluster
JorgensenD/sarscov2_phylo_pipeline
Pipeline and example files to replicate sarscov2phylodynamics.org blog post plots
JorgensenD/SARSCOV2_tree
ggtree plot with continents from gisaid data
JorgensenD/BEAST2_M2
BEAST 2.6 code for apple silicon java
JorgensenD/coursepage
Course page for RECON MSF course April 2021
JorgensenD/D68_fitness
Investigating fitness dynamics of EV-D68 clades
JorgensenD/jorgensend.github.io
JorgensenD/Pakistan-workshop-site
Workshop demo site, using R Markdown. Bare-bones version.
JorgensenD/PhD_thesis
Code related to my PhD thesis
JorgensenD/Phylonium_cluster
build and use phylonium on imperial hpc
JorgensenD/sarscov2-b.1.1.7
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (peer-reviewed)
JorgensenD/sarscov2Rutils
JorgensenD/The-Structured-Coalescent
The structured coalescent without the need to sample migration histories
JorgensenD/WPV1_genetics_2023
Code for the paper "Genetic epidemiology of wild type 1 poliovirus in the last endemic region"