Joscolgan
Group Leader at JGU Mainz (DE). Previous postdoc positions: Reed lab (UCC; IE); Wurm lab (QMUL; UK)
JGU MainzMainz, Germany
Pinned Repositories
Ancestry_HMM
ase
repo for code to implement allele-specific gene expression model of Skelly et al. 2011 Genome Res https://dx.doi.org/10.1101/gr.119784.110
biostat561
Course materials for BIOST561
bombus_mated_worker_analysis
Scripts for the analysis of RNA-seq datasets generated for the manuscript "Unexpected worker mating and colony-founding in a superorganism."
bter_immune_gene_evolution
Signatures of adaptation, constraints, and potential redundancy in the canonical immune genes of a key pollinator
Bter_neonicotinoid_exposure_experiment-1
Caste- and pesticide-specific effects of neonicotinoid pesticide exposure on gene expression in bumblebees
bter_population_genomics
Genomics of adaptation to a changing world in a wild bumblebee
sphaerularia_rnaseq
Infection by the castrating parasitic nematode Sphaerularia bombi changes gene expression in Bombus terrestris bumblebee queens
Joscolgan's Repositories
Joscolgan/bter_population_genomics
Genomics of adaptation to a changing world in a wild bumblebee
Joscolgan/sphaerularia_rnaseq
Infection by the castrating parasitic nematode Sphaerularia bombi changes gene expression in Bombus terrestris bumblebee queens
Joscolgan/Ancestry_HMM
Joscolgan/ase
repo for code to implement allele-specific gene expression model of Skelly et al. 2011 Genome Res https://dx.doi.org/10.1101/gr.119784.110
Joscolgan/biostat561
Course materials for BIOST561
Joscolgan/bombus_mated_worker_analysis
Scripts for the analysis of RNA-seq datasets generated for the manuscript "Unexpected worker mating and colony-founding in a superorganism."
Joscolgan/bter_immune_gene_evolution
Signatures of adaptation, constraints, and potential redundancy in the canonical immune genes of a key pollinator
Joscolgan/Bter_neonicotinoid_exposure_experiment-1
Caste- and pesticide-specific effects of neonicotinoid pesticide exposure on gene expression in bumblebees
Joscolgan/bumblebee_proteomics
Mating precedes selective immune priming which is maintained throughout bumblebee queen diapause.
Joscolgan/filter-fastq
Filter reads from a FASTQ file using a list of identifiers.
Joscolgan/GENESPACE
Joscolgan/genotype_plot
A set of functions to visualise genotypes based on a VCF
Joscolgan/haplogrep-cmd
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
Joscolgan/HASSL_Homogeneous_Analysis_of_SRA_rnaSequencing_Libraries
Joscolgan/Joscolgan
Config files for my GitHub profile.
Joscolgan/joscolgan.github.io
Joscolgan/joscolgan_old_site
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Joscolgan/Learn-Pandas
Tutorials on how to use pandas effectively to do data analysis
Joscolgan/MicrobiomeBestPracticeReview
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Joscolgan/OrthoFinder
Phylogenetic orthology inference for comparative genomics
Joscolgan/pipeline-transcriptome-de
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
Joscolgan/Proteus
R package for analysing proteomics data
Joscolgan/r-color-palettes
Comprehensive list of color palettes available in r ❤️🧡💛💚💙💜
Joscolgan/Research-Lab-Website
This is a simple static research lab website template which can be used by college students / professors.
Joscolgan/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
Joscolgan/salmo_smolt_study
Salmo smoltification RNA-seq study
Joscolgan/salmonid_immune_study
Evolution and expression of the immune system of a facultatively anadromous salmonid
Joscolgan/SURVIVOR
Toolset for SV simulation, comparison and filtering
Joscolgan/time
A NetLogo extension that brings date/time utilities and discrete event scheduling to NetLogo
Joscolgan/trout-migration