JosePereiraUA
José Pereira is a Biochemistry PhD candidate @ Universidade de Aveiro, Portugal: he's interested in exploring tech for molecular simulations and peptide design.
Aveiro, Portugal
Pinned Repositories
awesome-github-profile-readme-templates
This repository contains best profile readme's for your reference.
CarbGen.py
CarbGen is a molecular file generator for carbon materials
carbon
Script repository on the subject of "Computational optimization of bio-adsorbents for the removal of pharmaceuticals from water"
cell-orientation-identificator
This simple script allows the user to obtain both a .png file showing the identified cells and their oval orientations, as well as a .png graph with the polar histogram of the orientations of all cells in the provided input file.
photocatalytic_degradation
A companion tool for analysis of photocatalytic degradations studies in VOC-72M gas analyser or similar equipement.
ProtoSyn-use-cases
A repository to complex use cases examples of ProtoSyn.jl
rosetta-scripts
Some Rosetta Scripts that allow for various simple tasks
utility_scripts
A repository of usefull Python scripts for the subject of protein folding prediction
zalign.py
Implementation of the Kabsch algorithm in Python for 3D structural alignment/RMSD calculation. Can read/write files in .pdb, .gro and .xyz formats.
ProtoSyn.jl
A Julia-based framework for molecular modelling
JosePereiraUA's Repositories
JosePereiraUA/rosetta-scripts
Some Rosetta Scripts that allow for various simple tasks
JosePereiraUA/ProtoSyn-use-cases
A repository to complex use cases examples of ProtoSyn.jl
JosePereiraUA/utility_scripts
A repository of usefull Python scripts for the subject of protein folding prediction
JosePereiraUA/CarbGen.py
CarbGen is a molecular file generator for carbon materials
JosePereiraUA/zalign.py
Implementation of the Kabsch algorithm in Python for 3D structural alignment/RMSD calculation. Can read/write files in .pdb, .gro and .xyz formats.
JosePereiraUA/awesome-github-profile-readme-templates
This repository contains best profile readme's for your reference.
JosePereiraUA/carbon
Script repository on the subject of "Computational optimization of bio-adsorbents for the removal of pharmaceuticals from water"
JosePereiraUA/cell-orientation-identificator
This simple script allows the user to obtain both a .png file showing the identified cells and their oval orientations, as well as a .png graph with the polar histogram of the orientations of all cells in the provided input file.
JosePereiraUA/photocatalytic_degradation
A companion tool for analysis of photocatalytic degradations studies in VOC-72M gas analyser or similar equipement.
JosePereiraUA/JosePereiraUA
JosePereiraUA's personal profile
JosePereiraUA/ONNX.jl
Read ONNX graphs in Julia
JosePereiraUA/PortfolioManager
JosePereiraUA/pyprotosyn-classes
Base package for the lecturing of LVCC module on "Computational Design of Proteins" @ Universidade de Aveiro, Portugal.