Pinned Repositories
DBCV_Batch
Memory Efficient implementation in Python of Density-Based Clustering Validation (DBCV) metric. Adapted from the Fast DBCV calculation
dna2vec
dna2vec: Consistent vector representations of variable-length k-mers
hmdb_scripts
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
hmgdb_script
hmgdb_script-1
jotakas.github.io
Mem_DBCV
Memory Efficient implementation in Python of Density-Based Clustering Validation (DBCV) metric. Adapted from the Fast DBCV calculation
MetadataStandards
The primary objective of this GitHub page is to serve as a centralized repository for existing (meta)data standards.
mfe
Meta-Feature Extractor
MuDoGeR
MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
JotaKas's Repositories
JotaKas/Mem_DBCV
Memory Efficient implementation in Python of Density-Based Clustering Validation (DBCV) metric. Adapted from the Fast DBCV calculation
JotaKas/MuDoGeR
MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
JotaKas/DBCV_Batch
Memory Efficient implementation in Python of Density-Based Clustering Validation (DBCV) metric. Adapted from the Fast DBCV calculation
JotaKas/dna2vec
dna2vec: Consistent vector representations of variable-length k-mers
JotaKas/hmdb_scripts
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
JotaKas/hmgdb_script
JotaKas/hmgdb_script-1
JotaKas/jotakas.github.io
JotaKas/MetadataStandards
The primary objective of this GitHub page is to serve as a centralized repository for existing (meta)data standards.
JotaKas/mfe
Meta-Feature Extractor
JotaKas/microbiomeMarker
R package for microbiome biomarker discovery
JotaKas/nfdi4microbiota-knowledge-base
The NFDI4Microbiota Knowledge Base
JotaKas/partie
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
JotaKas/pymfe
Python Meta-Feature Extractor package.
JotaKas/qiime2
Official repository for the QIIME 2 framework.
JotaKas/submg
ENA metagenome upload