Pinned Repositories
AEM-funbuts
bash_fun
bash functions for common sequence manipulations. Use with gnu parallel.
BB10-IJSEM
Code for generating phylogenetic trees and figures associated with BB10's IJSEM paper
bioinformatics-workbook
Bioinformatics Workbook repository
Campy_HGT
drep
Rapid comparison and dereplication of genomes
gifrop
Genomic Islands From Roary Pangenomes
mastitis_scRNAseq
p_t_meta
growth rate estimates from metagenomic assemblies
pdtools
Functions for working with NCBI's Pathogen Detection data
Jtrachsel's Repositories
Jtrachsel/AEM-funbuts
Jtrachsel/BB10-IJSEM
Code for generating phylogenetic trees and figures associated with BB10's IJSEM paper
Jtrachsel/drep
Rapid comparison and dereplication of genomes
Jtrachsel/ggscinames
ggplot2 geoms for scientific names in figures (italics)
Jtrachsel/hbergs
Jtrachsel/Jtrachsel.github.io
Jtrachsel/Nov18_BioInfoClub
Jtrachsel/pairwiseAdonis
Pairwise multilevel comparison using adonis
Jtrachsel/resistant-starch
Jtrachsel/RPS_Keystone
Jtrachsel/Sal_sero
Jtrachsel/Tbacter