/perturb

Primary LanguageJupyter Notebook

Perturb-seq

Preprocessing

Steps

  • Make the scanpy data with annotation of perterbations
  • Quality control
  • Normalization
  • Batch Correction
  • Highly Variable Genes
  • PCA

MUSIC_results

Results and modified codes MUSIC.

scMAGeCK_results

Results for scMAGeCK.

MIMOSCA_results

Results for MIMOSCA.

Perturb-SNN

One-shot leearning with Siamese net work/ Triplet net work with triplet loss => good results

cavia

Fast Context Adaptation via Meta-Learning

MAML

Model-Agnostic Meta-Learning (few-shot learning)

matchingnetwork

Simple version of Matching Networks for One Shot Learning

kernel

Kernel methods