JudithR

Pinned Repositories

sRNAtoolbox
small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image
Language:Python11 2 373
reciprologs
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
Language:Python13 2 35
RelocaTE
Find the locations of TEs using the TSD in unassembled short reads by comparing to a closely related reference genome assembly
Language:Perl00
tigmint
⛓ Correct misassemblies using linked reads
Language:Common Workflow Language00
herro
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).
Language:Rust207 14 5613

JudithR's Repositories

JudithR/RelocaTE
Find the locations of TEs using the TSD in unassembled short reads by comparing to a closely related reference genome assembly
Language:Perl00
JudithR/tigmint
⛓ Correct misassemblies using linked reads
Language:Common Workflow Language00