/FFOCT

Software designed for FF-OCT experiments.

Primary LanguageMATLABMIT LicenseMIT

DOI If you use this software please consider citing it.

Introduction

The GUI allows for acquiring full field optical coherent tomography images and fluorescence images on a second camera (optional) or a Spectral domain OCT (optional).

Features:

  • Configurations for both in-vivo eye imaging with SDOCT and fluorescence measurement.
  • Real time parallel FFOCT and fluorescence imaging.
  • Real time parallel FFOCT and SDOCT imaging.
  • Real time dynamic FFOCT imaging.

Installation

Pre-requisites

In order to be able to run the program, you will need to install the following on your Matlab software:

  • Matlab 2017b (add-on: Ni-DAQmx, Zaber toolbox, Bitflow frame grabber adaptor).
  • Image acquistion toolbox with Bitflow (or you own framegrabber) depedencies.
  • PCO SDK for using fluorescence.
  • Thorlabs SDK for using SDOCT.

Configuration

Then you will probably need to change:

  • Serial ports for your own motors.
  • Initialisation files for your own cameras (initialisationOCT.m and initialisationFluo.m).