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Slides: pdf
To have a quick look at the static version of the notebooks download the html files and open them in your browser:
To open the notebook interactively follow these steps described on plutojl.org.
- Pfizer: Simulations of Novel Pharmacology of a Treatment for Heart Failure Sped up by 175x Faster using GPUs in Julia
- AstraZeneca: Probabilistic Modelling in Julia for Predicting Toxicity
- United Therapeutics: Computational Model of the Lung for Drug Development in Julia
- JuliaHub - Program Julia on the cloud: https://juliahub.com/products/overview/
- PumasQSP - Julia QSP software: https://juliahub.com/products/pumas-qsp/
- Official website with tutorial videos and notebooks: https://julialang.org and https://julialang.org/learning/notebooks
- Download and install Julia: https://julialang.org/downloads
- Julia Academy, for free courses by core Julia developers: https://juliaacademy.com
- The Julia Programming Language youtube channel: https://www.youtube.com/c/TheJuliaLanguage
- "Developing Julia Packages" tutorial by Chris Rackauckas: https://www.youtube.com/watch?v=QVmU29rCjaA
- "The Unreasonable Effectiveness of Multiple Dispatch" talk by Stefan Karpinski: https://www.youtube.com/watch?v=kc9HwsxE1OY
- Introduction to metaprogramming workshop by David Sanders: https://www.youtube.com/watch?v=2QLhw6LVaq0
- Using old R code in your new Julia project: https://juliainterop.github.io/RCall.jl/stable/gettingstarted/
- BioJulia organisation website for bioinformatics packages and discussion: https://biojulia.net
- Package searching on JuliaHub and Julia Observer: https://juliahub.com/ui/Packages and https://juliaobserver.com/categories/Biology
- "Julia for Bioinformatics and Computational Biology" talk by Ben Ward, note this talk is from 2016 and some of the details are out of date: https://www.youtube.com/watch?v=0aa3g1NrLBM
- "On the performance and design of BioSequences compared to the Seq language" blog post by Jakob Nybo Nissen and Ben J. Ward, which discusses some design tradeoffs and benchmarking in detail: https://biojulia.net/post/seq-lang
- Discourse, the main discussion forum for the Julia community: https://discourse.julialang.org
- Slack, for quick and informal correspondence with a community of over 8,000 members: https://julialang.org/slack
- Zulip, similar to Slack with unlimited message history: https://julialang.zulipchat.com
- JuliaCon, the conference for all things Julia: https://juliacon.org
- Current diversity and inclusion initiatives: https://julialang.org/diversity/current
Adapted from the online material of
Roesch, E. et al. Julia for biologists. Nat Methods 20, 655–664 (2023). https://doi.org/10.1038/s41592-023-01832-z