Pinned Repositories
COVID-19_Piedmont
COVID-19 Surveillance Data Modelling and Management Pipeline in Piedmont.
COVID19-Italy-Integrated-Surveillance-Data
COVID-19 integrated surveillance data provided by the Italian Institute of Health and deconvolved via UnrollingAverages.jl.
kenya-covid-three-waves
Model supporting "COVID-19 Transmission Dynamics Underlying Epidemic Waves in Kenya"
Mathepia.jl
Spatial and temporal epidemiology data mining flow tools including data processing and analysis, model setup and simulation, inference and evaluation. Focusing on state-of-the-art methods such as universal differential equations, epidemiology-informed deep learning methods.
MathepiaModels.jl
Epidemic spatial and temporal model setup and simulation. Focusing on state of the art epidemiology models such as universal differential equations, epidemiology-informed deep learning models. Part of Mathepia.jl
MathEpiDeepLearning
Awesome-spatial-temporal-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included. Keep updating.
monkeypox_heavytail
Underlying code for Endo et al. "Heavy-tailed sexual contact networks and the epidemiology of monkeypox outbreak in non-endemic regions, May 2022."
monkeypox_UK
Some code for monkeypox
RSV-seasonality-public
UnrollingAverages.jl
A Julia package to deconvolve ("unroll") moving averages of time series.
Julia Epi's Repositories
JuliaEpi/Epi.jl
Collections of epidemiology related functions
JuliaEpi/MIT-Global-COVID-Modelling-Project-1
JuliaEpi/AgentBasedEpidemicsDynamics
JuliaEpi/COVID-19-ML-Quarantine-Control-Model
JuliaEpi/Covid19-1
Wang et al SEIR-like model for 2019/20 Covid-19 outbreak
JuliaEpi/covid19abm.jl
Agent Based Model for COVID 19 transmission dynamics
JuliaEpi/covid_vac
ABM simulating vaccination strategies against COVID-19
JuliaEpi/delayed_dose
JuliaEpi/epicookbook
A cookbook of epidemiological models
JuliaEpi/EpidemicSimulations.jl
Graph based epidemic simulations.
JuliaEpi/EpiRecipes.jl
epirecipes for Julia
JuliaEpi/idmodelr
Infectious disease model library and utilities
JuliaEpi/ILMs.jl
Tools for simulating and performing inference of individual level infectious disease transmission models, built in Julia
JuliaEpi/incidence
☣:chart_with_upwards_trend::chart_with_downwards_trend:☣ Compute and visualise incidence
JuliaEpi/influenza
JuliaEpi/ncov2019odemodel
COVID-19 ODE model for publication
JuliaEpi/npt-saliva-testing
COVID 19 NP vs Saliva testing
JuliaEpi/Reopening_ImpactSimulator_US_States
JuliaEpi/ReproductiveRatioVBD
Reproductive ratio
JuliaEpi/RSVHouseholdModel
Julia 0.6 code for running the RSV Household transmission model (see https://www.biorxiv.org/content/10.1101/569335v1.abstract for preprint).
JuliaEpi/SafeBlues
JuliaEpi/SciMLCovidForecasting.jl
Repo for forecasting Covid-19 infections using SciML
JuliaEpi/SeasonalFluModelWithHealthEcon
This repository houses code developed for the analysis presented in the scientific publication "Optimising age coverage of seasonal influenza vaccination in England: A mathematical and health economic evaluation" by Edward M. Hill et al.
JuliaEpi/VaccineMutation
JuliaEpi/zika
ZIKA ABM in JULIA