Failure to precompile on julia 1.11 - MethodError: no method matching resize!(::Memory{UInt8}, ::Int64)

Question

Failure to precompile on julia 1.11 - MethodError: no method matching resize!(::Memory{UInt8}, ::Int64)

Closed this issue 6 months ago · 1 comments

⌃ [033835bb] + JLD2 v0.4.32
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [5789e2e9] + FileIO v1.16.4
⌃ [033835bb] + JLD2 v0.4.32
  [189a3867] + Reexport v1.2.2
⌅ [3bb67fe8] + TranscodingStreams v0.9.13
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
Precompiling project...
  ✗ JLD2
  3 dependencies successfully precompiled in 9 seconds. 58 already precompiled.
  1 dependency errored.
  For a report of the errors see `julia> err`. To retry use `pkg> precompile`

julia> err
PkgPrecompileError: The following 1 direct dependency failed to precompile:

JLD2

Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/Users/ian/.julia/compiled/v1.11/JLD2/jl_lk4rWB".
ERROR: LoadError: MethodError: no method matching resize!(::Memory{UInt8}, ::Int64)
The function `resize!` exists, but no method is defined for this combination of argument types.

Closest candidates are:
  resize!(::BitVector, ::Integer)
   @ Base bitarray.jl:814
  resize!(::Vector, ::Integer)
   @ Base array.jl:1431
  resize!(::JLD2.MmapIO, ::Ptr{Nothing})
   @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/mmapio.jl:140

Stacktrace:
  [1] typename(T::DataType)
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/data/writing_datatypes.jl:393
  [2] h5convert!(out::JLD2.IndirectPointer, ::JLD2.OnDiskRepresentation{(0, 16), Tuple{String, Vector{Any}}, Tuple{JLD2.Vlen{String}, JLD2.Vlen{JLD2.RelOffset}}, 32}, f::JLD2.JLDFile{JLD2.MmapIO}, T::DataType, wsession::JLD2.JLDWriteSession{Dict{UInt64, JLD2.RelOffset}})
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/data/writing_datatypes.jl:418
  [3] write_data(io::JLD2.MmapIO, f::JLD2.JLDFile{JLD2.MmapIO}, data::Type, odr::JLD2.OnDiskRepresentation{(0, 16), Tuple{String, Vector{Any}}, Tuple{JLD2.Vlen{String}, JLD2.Vlen{JLD2.RelOffset}}, 32}, ::JLD2.HasReferences, wsession::JLD2.JLDWriteSession{Dict{UInt64, JLD2.RelOffset}})
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/dataio.jl:96
  [4] write_attribute(io::JLD2.MmapIO, f::JLD2.JLDFile{JLD2.MmapIO}, attr::JLD2.WrittenAttribute{JLD2.WriteDataspace{0, Tuple{}}, JLD2.CommittedDatatype, DataType}, wsession::JLD2.JLDWriteSession{Dict{UInt64, JLD2.RelOffset}})
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/attributes.jl:48
  [5] commit(f::JLD2.JLDFile{JLD2.MmapIO}, dt::JLD2.H5Datatype, attrs::Tuple{JLD2.WrittenAttribute{JLD2.WriteDataspace{0, Tuple{}}, JLD2.CommittedDatatype, DataType}})
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/datatypes.jl:354
  [6] h5fieldtype(f::JLD2.JLDFile{JLD2.MmapIO}, ::Type{DataType}, readas::Type, ::Type{Val{true}})
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/data/writing_datatypes.jl:378
  [7] h5type(f::JLD2.JLDFile{JLD2.MmapIO}, ::Type{DataType}, x::Type)
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/data/writing_datatypes.jl:384
  [8] commit(::JLD2.JLDFile{JLD2.MmapIO}, ::Any, ::DataType, ::DataType)
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/data/writing_datatypes.jl:200
  [9] commit_compound(f::JLD2.JLDFile{JLD2.MmapIO}, names::Vector{Symbol}, writtenas::DataType, readas::Type)
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/data/writing_datatypes.jl:185
 [10] macro expansion
    @ ~/.julia/packages/JLD2/ZPJxn/src/data/writing_datatypes.jl:99 [inlined]
 [11] h5fieldtype(f::JLD2.JLDFile{JLD2.MmapIO}, writeas::Type{ComplexF64}, readas::Type{ComplexF64}, initialized::Type{Val{false}})
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/data/writing_datatypes.jl:91
 [12] h5type
    @ ~/.julia/packages/JLD2/ZPJxn/src/data/specialcased_types.jl:227 [inlined]
 [13] h5type
    @ ~/.julia/packages/JLD2/ZPJxn/src/data/writing_datatypes.jl:142 [inlined]
 [14] write_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, x::Matrix{ComplexF64}, wsession::JLD2.JLDWriteSession{Dict{UInt64, JLD2.RelOffset}}, compress::Bool)
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/inlineunion.jl:44
 [15] write_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, x::Matrix{ComplexF64}, wsession::JLD2.JLDWriteSession{Dict{UInt64, JLD2.RelOffset}})
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/inlineunion.jl:36
 [16] write(g::JLD2.Group{JLD2.JLDFile{JLD2.MmapIO}}, name::String, obj::Matrix{ComplexF64}, wsession::JLD2.JLDWriteSession{Dict{UInt64, JLD2.RelOffset}}; compress::Nothing)
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/compression.jl:137
 [17] write
    @ ~/.julia/packages/JLD2/ZPJxn/src/compression.jl:125 [inlined]
 [18] write(f::JLD2.JLDFile{JLD2.MmapIO}, name::String, obj::Matrix{ComplexF64}, wsession::JLD2.JLDWriteSession{Dict{UInt64, JLD2.RelOffset}})
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/compression.jl:121
 [19] (::JLD2.var"#82#83"{@Kwargs{a::Int64, b::Float64, c::Vector{Float64}, d::Matrix{ComplexF64}, e::Dict{String, Int64}, f::String, g::NTuple{5, Int64}, h::Vector{Float64}}})(f::JLD2.JLDFile{JLD2.MmapIO})
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/loadsave.jl:246
 [20] jldopen(::Function, ::String, ::Vararg{String}; kws::@Kwargs{compress::Bool, iotype::DataType})
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/loadsave.jl:4
 [21] jldopen
    @ ~/.julia/packages/JLD2/ZPJxn/src/loadsave.jl:1 [inlined]
 [22] #jldsave#81
    @ ~/.julia/packages/JLD2/ZPJxn/src/loadsave.jl:243 [inlined]
 [23] jldsave (repeats 2 times)
    @ ~/.julia/packages/JLD2/ZPJxn/src/loadsave.jl:240 [inlined]
 [24] (::JLD2.var"#121#125")(path::String, ::IOStream)
    @ JLD2 ~/.julia/packages/JLD2/ZPJxn/src/precompile.jl:14
 [25] mktemp(fn::JLD2.var"#121#125", parent::String)
    @ Base.Filesystem ./file.jl:790
 [26] mktemp(fn::Function)
    @ Base.Filesystem ./file.jl:788
 [27] top-level scope
    @ ~/.julia/packages/JLD2/ZPJxn/src/precompile.jl:2
 [28] include(mod::Module, _path::String)
    @ Base ./Base.jl:557
 [29] include
    @ ~/.julia/packages/JLD2/ZPJxn/src/JLD2.jl:1 [inlined]
 [30] top-level scope
    @ ~/.julia/packages/JLD2/ZPJxn/src/JLD2.jl:601
 [31] include
    @ ./Base.jl:557 [inlined]
 [32] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2806
 [33] top-level scope
    @ stdin:4
in expression starting at /Users/ian/.julia/packages/JLD2/ZPJxn/src/precompile.jl:1
in expression starting at /Users/ian/.julia/packages/JLD2/ZPJxn/src/JLD2.jl:1
in expression starting at stdin:

Answer 1 · 2024-10-17T13:21:51.000Z

Whoops. I was on a very old version (tricked by my own Pkg feature.. I expected the latest version to be added, but it added the latest already installed version..)