JulianneDavid

dataframe_image

A python package for embedding pandas DataFrames as images into pdf and markdown documents

JulianneDavid.github.io

Live GitHub Page at https://juliannedavid.github.io/

missing-citations

shared-cancer-splicing

Code for reproducing analyses and figures for shared alternative cancer splicing paper

strandedness

For analyzing RNA-seq data for stranded or unstranded experimental protocol.

immunorx_response_pipeline

intronomer

Tool for calculating intron persistence, as defined in https://doi.org/10.1186/s13059-022-02789-6

neoepiscope

predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data

ri-tests

Supporting materials for "Retained introns in long RNA-seq reads are not reliably detected in sample-matched short reads"

JulianneDavid/shared-cancer-splicing

Code for reproducing analyses and figures for shared alternative cancer splicing paper

JulianneDavid/missing-citations

JulianneDavid/JulianneDavid.github.io

Live GitHub Page at https://juliannedavid.github.io/

JulianneDavid/strandedness

For analyzing RNA-seq data for stranded or unstranded experimental protocol.