Tools to parse and automatically compare multiple vcf to find the common mutation
First the data need to be extracted in a vcf file.
To do this put all the vcf files in the same folder as the schell script and run it with these commands:
chmod +x data_grepper.sh (allows the shell script to be executed)
./data_grepper.sh (executes the shell script)
The resulting file is called oscur.txt and can be read as a csv with tabulation as separator.
To read the CSV file call the open_file(path: str) -> pd.DataFrame function which takes a path to the CSV file generated by data_grepper.sh as argument, it generates a pandas dataframe.
To compare the different mutation use the merge_formater(df: pd.DataFrame) function which takes a pandas DataFrame opened by the open_file function.