Jungal10

Jungal10's Stars

• jianhong/16S_pipeline

  16S RNA microbiome pipeline

  Language:Nextflow6

• theislab/DRVI

  Unsupervised Deep Disentangled Representation of Single-Cell Omics

  Language:Python343

• dzhang32/ggtranscript

  Visualizing transcript structure and annotation using ggplot2

  Language:R1339

• UK-SBCoA-EbbertLab/RNApysoforms

  A Python adaptation of ggtranscript with similar functionality, using Plotly and Polars for fast and interactive RNA isoform visualizations.

  Language:Jupyter Notebook3

• 10XGenomics/loupeR

  Convert Seurat objects to 10x Genomics Loupe files.

  Language:R10615

• t-neumann/slamdunk

  Streamlining SLAM-seq analysis with ultra-high sensitivity

  Language:Python3923

• shimlab/NanoSplicer

  Language:Python296

• Kuanhao-Chao/LiftOn

  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

  Language:Python683

• Shao-Group/aletsch

  Assembler for multiple RNA-seq samples

  Language:C++41

• pachterlab/kallisto

  Near-optimal RNA-Seq quantification

  Language:C666173

• tidymodels/TMwR

  Code and content for "Tidy Modeling with R"

  Language:RMarkdown607289

• FuhaiLiAiLab/mosGraphFlow

  Multi-Scale Multi-Hop Flow for Interpreting Mechanism of Signaling

  Language:Jupyter Notebook62

• krassowski/complex-upset

  A library for creating complex UpSet plots with ggplot2 geoms

  Language:Jupyter Notebook47429

• FuhaiLiAiLab/mosGraphGPT

  A graph-based foundation model for bulk-seq multi-omics data

  Language:Jupyter Notebook5

• timothyjamesbecker/FusorSV

  A Data Fusion Method for Multi Source (VCF4.0+) Structural Variation Analysis

  Language:Python212

• kcleal/gw

  Genome browser and variant annotation

  Language:C++2877

• TRON-Bioinformatics/EasyFuse

  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.

  Language:Python5612

• Starlitnightly/omicverse

  A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

  Language:Jupyter Notebook50262

• writing-resources/awesome-scientific-writing

  :keyboard: A curated list of awesome tools, demos and resources to go beyond LaTeX

  78247

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.2k621

• carolstran/cv

  :page_with_curl: Carolyn Stransky's CV

  113164

• haplotype/idul

  iterative dispersion update to fit linear mixed model

  Language:C++3

• hrbrmstr/waffle

  :maple_leaf: Make waffle (square pie) charts in R

  Language:R77894

• CompEpigen/figeno

  Tool for plotting sequencing data along genomic coordinates.

  Language:Python2528

• EmilHvitfeldt/r-color-palettes

  Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜

  Language:R1.5k139

• MarcosNicolau/obsidian-for-academia

  The ultimate collaborative guide to convert obsidian into an academic writing tool!

  Language:TeX473

• HodgesGenomicsLab/ATAC-STARR-seq

  Scripts for analyzing ATAC-STARR data.

  Language:Jupyter Notebook105

• nf-core/cutandrun

  Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

  Language:Nextflow8549

• pinellolab/CRISPResso2

  Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

  Language:Python28596

• lucapinello/CRISPResso

  Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

  Language:Python13456