Onehic.py: list index out of range
mushroomOK opened this issue · 3 comments
mushroomOK commented
Hi, when I used "onehic.py", I got the error "IndexError: list index out of range". I am unsure what the "list index" refers to.
genome size: 3.3 Gb, hic size: 4.7 Gb.
"slurm-3620847.log" provides more details.
slurm-3620847.log
Jwindler commented
Can you also send me the running command? It is best if you share the hic and assembly files with me and I can help you solve the problem locally. @mushroomOK
Jwindler commented
From the preliminary judgment of the log, it seems that you used the genome.fasta
file as the input of assembly
mushroomOK commented
Thank you for your prompt response! After further investigation, I have confirmed that I used "genome.fasta" as the input for the "-asy" parameter, which was the root cause of the problem.