Jwindler/AutoHiC

Onehic.py: list index out of range

mushroomOK opened this issue · 3 comments

Hi, when I used "onehic.py", I got the error "IndexError: list index out of range". I am unsure what the "list index" refers to.
genome size: 3.3 Gb, hic size: 4.7 Gb.

"slurm-3620847.log" provides more details.
slurm-3620847.log

Can you also send me the running command? It is best if you share the hic and assembly files with me and I can help you solve the problem locally. @mushroomOK

From the preliminary judgment of the log, it seems that you used the genome.fasta file as the input of assembly

Thank you for your prompt response! After further investigation, I have confirmed that I used "genome.fasta" as the input for the "-asy" parameter, which was the root cause of the problem.