Jwindler/AutoHiC

Issues

• NMXXWAS.2.hic cannot be opened for reading

  #46 opened 2 months ago by qingxi586
  12

• How about small genome size using Hi-C data?

  #45 opened 2 months ago by sunnycqcn
  4

• ImportError: libGL.so.1: cannot open shared object file

  #39 opened 2 months ago by George-Zhou02
  7

• onehic.py error : no such file png/info.txt

  #44 opened 2 months ago by pdru
  9

• adjusted.assembly is the same as before when using onehic.py.

  #43 opened 2 months ago by DayTimeMouse
  1

• Could you mind giving a detailed, step-by-step pipeline for onehic.py?

  #18 opened a year ago by aijigekoukou-shen
  1

• IndexError: cannot do a non-empty take from an empty axes.

  #21 opened 9 months ago by 1538501175
  2

• RuntimeError: nms is not compiled with GPU support

  #40 opened 2 months ago by laijirong
  5

• What is the difference between contig_autohic.fasta, contig.FINAL.fasta and contig.final.fasta

  #42 opened 2 months ago by shelkmike
  3

• What is the disadvantage of setting very large ERROR_MAX_LEN?

  #41 opened 2 months ago by shelkmike
  1

• Error One Setp AutoHiC

  #37 opened 2 months ago by xueqinerer
  2

• AutoHiC Installation Issues

  #36 opened 2 months ago by Mrhuangc
  2

• Error: undefined symbol: EVP_md2

  #35 opened 2 months ago by suncpark
  2

• Error with chr_model.pth is not a checkpoint file

  #34 opened 2 months ago by jin-d919
  9

• Run Juicer

  #38 opened 3 months ago by xtbggqy
  4

• error with onehic.py

  #30 opened 3 months ago by a-bite-of-semtex
  2

• usage of autohic: Extending AutoHiC to other assembly software

  #28 opened 3 months ago by hylu-coder
  6

• Inquiry About Publicly Available Datasets Used in Your Work

  #33 opened 3 months ago by Jasonfengjx
  1

• AutoHIC for pore-c data

  #32 opened 3 months ago by JWJ13164328557
  1

• singularity build error

  #29 opened 4 months ago by Liyong-Zhang
  6

• CUDA version

  #31 opened 4 months ago by txfc
  7

• fewer chromosomes

  #26 opened 4 months ago by gargkritika
  4

• AutoHiC seems to be making changes, but results look same.

  #10 opened 4 months ago by kiratalreja3
  2

• Error with GPU/CUDA

  #9 opened 4 months ago by kiratalreja3
  7

• error

  #7 opened 4 months ago by taotaoyuan
  1

• Issues with running AutoHiC on two datasets

  #5 opened 4 months ago by ksenia-krasheninnikova
  12

• utilzing omni-c reads

  #3 opened 4 months ago by sadikmu
  1

• usage of onehic

  #27 opened 4 months ago by hylu-coder
  1

• Failure during chimera handling

  #25 opened 9 months ago by gargkritika
  2

• issue with docker: [fputs] No space left on device ***! Alignment

  #24 opened 9 months ago by gargkritika
  8

• How to resume operation after interruption.

  #22 opened 9 months ago by sip123a
  5

• Why does the result after autohic adjustment look worse than the result before adjustment, and how should this situation be adjusted

  #23 opened 9 months ago by lstxmu
  3

• File XXXX/autohic_results/3/XXXX.final.hic cannot be opened for reading

  #20 opened 9 months ago by mcariou
  13

• Docker Container doesn't contain the code.

  #8 opened 10 months ago by dslater82
  3

• Why only accept juicer+3d-dna results?

  #4 opened 10 months ago by xiekunwhy
  3

• docker image is needed

  #2 opened 10 months ago by OtaviaW
  1

• Installation error (conda)

  #11 opened 10 months ago by mushroomOK
  2

• Add Options for Pore-C Data

  #19 opened 10 months ago by GLking123
  1

• The number of obtained chromosomes does not match the actual count

  #17 opened a year ago by lstxmu
  1

• Run in cpu mode , a error hadd occur, please help fix it.

  #15 opened a year ago by lstxmu
  1

• Files in chromosome directory

  #16 opened a year ago by shig913
  1

• error report

  #14 opened a year ago by lstxmu
  12

• Hello author, I have configured the environment and files. Started running, but kept reporting the following error

  #13 opened a year ago by Biomedical-CYZ
  13

• Onehic.py: list index out of range

  #12 opened a year ago by mushroomOK
  3

• Some prerequisites for successful operation

  #6 opened a year ago by XXH123a
  1