Jwindler/AutoHiC

Files in chromosome directory

shig913 opened this issue · 1 comments

Thank you for this great tool!
I want to know files in the directory, autohic_results/chromosome.
What do the files xxx_final.fasta and xxx_FINAL.fasta mean?

You can compare their sequence lengths and names to see the difference. Generally speaking, xxx_FINAL.fasta differentiates scaffolds, merges contigs, and changes sequence names.