This repository contains example python notebooks for parsing and processing BUS format single-cell RNA-seq files.
To run the notebooks, make sure you have kallisto >= 0.45 and bustools installed. The source and binaries are available at:
We recommend beginners work through this notebook:
These notebooks can be used to completely process datasets, starting with downloading the raw data all the way to basic QC plots. They are intended as tutorials on the use of the BUS format.
These notebooks are still a work in progress and may not have all the code needed to download and process data automatically.