Pinned Repositories
bindSC
Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data
Cyclum
Identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations
MEDALT
Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
METAFlux
Monopogen
SNV calling from single cell sequencing
MonoVar
Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data
SCMarker
Marker gene selection from scRNA-seq data
SCMER
Marker Selection by matching manifolds and elastic net
stratified-tests-for-seurat
Stratified statistic hypothesis tests for Seurat
Texomer
Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data
KChen-lab's Repositories
KChen-lab/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.