Pinned Repositories
cgmlst-dists
🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
chewBBACA
BSR-Based Allele Calling Algorithm
distle
Fast distance matrix calculations on fasta and cgmlst files
django-oidc-provider
OpenID Connect and OAuth2 provider implementation for Djangonauts.
Jovian
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
AmpliGone
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
juno-cgmlst
Pipeline to perform cgMLST (or wgMLST) analysis. At the moment it just handles few genera for cgMLST
juno-library
Package containing the basic classes that are used as base for the wrappers of the other Juno pipelines
TrueConsense
TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alignment artefacts, and is able to generate consensus sequences on multiple coverage-thresholds at the same time
ViroConstrictor
ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
KHajji's Repositories
KHajji/distle
Fast distance matrix calculations on fasta and cgmlst files
KHajji/cgmlst-dists
🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
KHajji/chewBBACA
BSR-Based Allele Calling Algorithm
KHajji/django-oidc-provider
OpenID Connect and OAuth2 provider implementation for Djangonauts.
KHajji/Jovian
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
KHajji/juno-assembly
Pipeline to process raw sequencing data up to de-novo assembly and the accompanying statistics
KHajji/mock-oidc-provider
KHajji/sars-cov-2-workflow-comparison
A collection of workflows for analyzing the SARS-CoV-2 genome.
KHajji/tic-chess-go
tic-chess-go