KPMP: Kidney Precision Medicine Project

KPMP: NIH/NIDDK-supported kidney precision medicine project (http://www.kpmp.org)

Pinned Repositories

Cell-State-Atlas-2022
Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney
Language:Jupyter Notebook14 2 15
heavens-docker
Repository for all of the KPMP docker containers and docker-compose scripts
Language:Shell2 3 00
hydra-web
This is the front-end code for the KPMP data repository.
Language:JavaScript1 2 00
KTAO
KTAO stands for the Kidney Tissue Atlas Ontology
5 2 53
orion-data
Service layer for the data lake upload tool for KPMP
Language:Java3 3 02
orion-web
UI layer for the data lake uploader for KPMP
Language:JavaScript2 3 13
pegasus-data
Repository for the Atlas Explorer Tool service layer
Language:Java0 2 00
pegasus-web
Repository for the Atlas Explorer tool
Language:JavaScript0 2 00
redcap-omop-etl
ETL scripts to transform REDCap data into the OMOP CDM
Language:Python30
wsi-worker
A containerized worker to convert WSI slides in SVS format to DZI
Language:Shell2 3 01

KPMP: Kidney Precision Medicine Project's Repositories

KPMP/Cell-State-Atlas-2022
Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney
Language:Jupyter Notebook14 2 15
KPMP/KTAO
KTAO stands for the Kidney Tissue Atlas Ontology
5 2 53
KPMP/orion-data
Service layer for the data lake upload tool for KPMP
Language:Java3 3 02
KPMP/redcap-omop-etl
ETL scripts to transform REDCap data into the OMOP CDM
Language:Python30
KPMP/cassiopeia-web
Repo to store the front-end code for the Participant Whole Slide Image Viewer
Language:JavaScript2 3 00
KPMP/heavens-docker
Repository for all of the KPMP docker containers and docker-compose scripts
Language:Shell2 3 00
KPMP/orion-web
UI layer for the data lake uploader for KPMP
Language:JavaScript2 3 13
KPMP/wsi-worker
A containerized worker to convert WSI slides in SVS format to DZI
Language:Shell2 3 01
KPMP/delphinus-data
Service layer for the Digital Pathology Repository for the Kidney Precision Medicine Project.
Language:Java1 2 01
KPMP/delphinus-web
This project is the web front-end for the Digital Pathology Repository for the Kidney Precision Medicine Project.
Language:JavaScript1 2 01
KPMP/gisch-et-al-2023
Language:JavaScript1
KPMP/hydra-data
Gives us an endpoint to get the data back to load into ES for the KPMP data repository
Language:Java1 3 0
KPMP/hydra-web
This is the front-end code for the KPMP data repository.
Language:JavaScript1 2 00
KPMP/norma
Repository to hold the json documents and generator for dynamic forms in orion
Language:Java1 2 0
KPMP/pegasus-data
Repository for the Atlas Explorer Tool service layer
Language:Java0 2 00
KPMP/pegasus-web
Repository for the Atlas Explorer tool
Language:JavaScript0 2 00
KPMP/portal-ui
Data Portal Front End
Language:JavaScript0 1 00
KPMP/atlas-file-service
Service that provides files for the KPMP Atlas
Language:Python
KPMP/atlas-index-creation-worker
Language:Python
KPMP/cassiopeia-data
Service layer for the participant whole slide image viewer
Language:Java2 0
KPMP/eridanus-data
Service layer for the notification service for KPMP
Language:Java2 01
KPMP/garden-data
Place for service layer spikes
Language:Java2 0
KPMP/hubble-data
Gives us an endpoint to get the data back to load into ES for Spatial Viewer
Language:Java
KPMP/hubble-web
Contains the KPMP Atlas Spatial Viewer
Language:JavaScript1 0
KPMP/kpmp-common-components
KPMP's common set of cross application react componenets
Language:JavaScript
KPMP/kpmp-common-styles
The stylesheets used across the KPMP applications
Language:SCSS2 0
KPMP/libra-data
Tools supporting the Data Manager Dashboard (DMD)
Language:Python2 0
KPMP/libra-web
UI layer for the data manager dashboard for KPMP
Language:JavaScript2 0
KPMP/scutum
Auth service for KPMP DVC applications.
Language:Java1
KPMP/stateManagerService
The state manager service will do the work to keep track of the state of packages as they travel from the data lake to the knowledge environment.
Language:Java1