KYQiu21
PhD student at Max Planck Institute for Biology (Lupas lab) | Interested in protein evolution and origin of life | New to protein design and machine learning
Max Planck Institute for BiologyTuebingen
Pinned Repositories
bridging_theme_hmmer
CRM2.0
DeepDrug3D
A convolutional neural network for classifying binding pockets based on spatial and chemical information extracted from the pockets.
DeepUrfold_kqiu
Explore protein fold space with deep generative models
evolution
This repository contains the code for our manuscript - 'A comprehensive fitness landscape model reveals the evolutionary history and future evolvability of eukaryotic cis-regulatory DNA sequences'
gpvolve
A Python API for computing evolutionary paths across genotype-phenotype maps and clustering of genotype-phenotype maps.
iGEM2020WHU
notebooks-nonlinear-high-order-epistasis
Jupyter notebooks for Genetics paper, "Detecting high-order epistasis in nonlinear genotype-phenotype maps"
plmrepeat
Exploiting sequence representations derived from protein language models for repeat identification
rmsd
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
KYQiu21's Repositories
KYQiu21/plmrepeat
Exploiting sequence representations derived from protein language models for repeat identification
KYQiu21/bridging_theme_hmmer
KYQiu21/CRM2.0
KYQiu21/DeepDrug3D
A convolutional neural network for classifying binding pockets based on spatial and chemical information extracted from the pockets.
KYQiu21/DeepUrfold_kqiu
Explore protein fold space with deep generative models
KYQiu21/evolution
This repository contains the code for our manuscript - 'A comprehensive fitness landscape model reveals the evolutionary history and future evolvability of eukaryotic cis-regulatory DNA sequences'
KYQiu21/gpvolve
A Python API for computing evolutionary paths across genotype-phenotype maps and clustering of genotype-phenotype maps.
KYQiu21/iGEM2020WHU
KYQiu21/notebooks-nonlinear-high-order-epistasis
Jupyter notebooks for Genetics paper, "Detecting high-order epistasis in nonlinear genotype-phenotype maps"
KYQiu21/rmsd
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
KYQiu21/tyleransom.github.io