KaWingLee9

KaWingLee9's Stars

• junjunlab/scRNAtoolVis

  Useful functions to make your scRNA-seq plot more cool!

  Language:R24525

• omnideconv/immunedeconv

  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

  Language:R428101

• randel/HiDecon

  Hierarchical cellular deconvolution

  Language:R21

• crazyhottommy/getting-started-with-genomics-tools-and-resources

  Unix, R and python tools for genomics and data science

  Language:Shell1.1k339

• junjunlab/jjPlot

  funny geom/stat functions for visualization

  Language:R11

• xyang2uchicago/BioTIP

  BioTIP: Biological Tipping-Point Identification and Characterization

  Language:HTML185

• tomermilo/fibroblast_macrophage_circuits

  Language:Jupyter Notebook1

• stuchly/Rphenoannoy

  Optimised version of Rphenograph with annoy KNN - modified https://github.com/JinmiaoChenLab/Rphenograph

  Language:C++41

• algernonx/polygon2mask

  Transfer polygon(float vertex) to a mask which demonstrate the inner points of polygon, implement by Python

  Language:Python9

• LiHongCSBLab/SOAPy

  Language:Jupyter Notebook101

• NBISweden/workshop-scRNAseq

  Single cell RNA sequencing analysis course

  Language:HTML18495

• pstew/escape_excel

  Escape Excel: a tool for preventing gene symbol and accession conversion errors

  Language:Perl2618

• omnideconv/omnideconv

  Unified access to several second-generation deconvolution methods

  Language:HTML4810

• omnideconv/spacedeconv

  A unified interface to spatial transcriptomics deconvolution tools

  Language:R245

• kf-liu/The-Art-of-Linear-Algebra-zh-CN

  Graphic notes on Gilbert Strang's "Linear Algebra for Everyone", 线性代数的艺术中文版, 欢迎PR.

  Language:PostScript3.9k408

• angelolab/ark-analysis

  Integrated pipeline for multiplexed image analysis

  Language:Jupyter Notebook6925

• jackxiong2020/scrnaVis

  An R package for interactive exploration and analysis of single-cell data

  Language:R5

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.2k893

• GotelliLab/EcoSimR

  Repository for EcoSimR, by Gotelli, N.J. , Hart E. M. and A.M. Ellison. 2014. EcoSimR 0.1.0

  Language:R2510

• LihongLab/Suppl-data-Benchmark

  Language:Python113

• EasyChart/Beautiful-Visualization-with-R

  《R语言数据可视化之美》配套代码

  Language:PostScript739546

• junjunlab/junjunlab

  Language:R151

• chuiqin/irGSEA

  The integration of single cell rank-based gene set enrichment analysis

  Language:R9917

• ventolab/CellphoneDB

  CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

  Language:Jupyter Notebook31250

• ZJUFanLab/scCATCH

  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

  Language:R20736

• HongYhong/cocoon

  Language:Python3

• REditorSupport/vscode-R

  R Extension for Visual Studio Code

  Language:TypeScript1.1k123

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.8k499

• BiomedicalMachineLearning/stLearn

  A novel machine learning pipeline to analyse spatial transcriptomics data

  Language:Python18124

• BodenmillerGroup/ImcSegmentationPipeline

  A pixel classification based multiplexed image segmentation pipeline

  Language:Jupyter Notebook8235