Kaddea

Pinned Repositories

• ssGSEA2.0

  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

  Language:R270133380

• bam-readcount

  Count bases in BAM/CRAM files

  Language:CMake314549496

• open-cravat

  A modular annotation tool for genomic variants

  Language:JavaScript1182022730

• seq2HLA

  In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising all HLA alleles and outputs the most likely HLA class I and class II genotypes (in 4 digit resolution), a p-value for each call, and the expression of each class.

  Language:Python482177

Kaddea's Repositories