A Binder-compatible repo with an environment.yml file.
Access this Binder by clicking the blue badge above or at the following URL:
http://mybinder.org/v2/gh/binder-examples/conda_environment/master?filepath=index.ipynb
The environment.yml file should list all Python libraries on which your notebooks
depend, specified as though they were created using the following conda commands:
conda activate example-environment
conda env export --from-history -f environment.yml
Note that the only libraries available to you will be the ones specified in
the environment.yml, so be sure to include everything that you need!
Also note that if you skip the --from-history, conda may include OS-specific
packages in environment.yml, which you would have to manually prune from
environment.yml. For example, confirmed macOS-specific packages that should
be removed are:
- libcxxabi=4.0.1
- appnope=0.1.0
- libgfortran=3.0.1
- libcxx=4.0.1
The data are distributed under CC-BY licence, the original source:
Vicoso B, Bachtrog D (2015) Numerous Transitions of Sex Chromosomes in Diptera. PLoS Biol 13(4): e1002078. https://doi.org/10.1371/journal.pbio.1002078