KasperSkytte
Staff scientist in HPC systems, scientific computing and data science at the department of chemistry and bioscience, Aalborg University. And PeeAgeDee!
Aalborg UniversityAalborg, Denmark
Pinned Repositories
Amplicon-visualiser
A shiny app to visualise amplicon data, based on ampvis2
ampvis2
Tools for visualising microbial community amplicon data
ASV_pipeline
Bioinformatic pipeline for processing 16S rRNA amplicon data with exact Amplicon Sequence Variants (ASV's)
AutoTax
Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples
BASH_template
A simple BASH template script
bioscripts
Miscellaneous bioinformatic helper scripts for various tasks
MasterThesis
My master thesis in Biotechnology as written with bookdown to integrate interactive plots. A PDF version is also available. CLICK THE LINK TO VIEW
MC-prediction
Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks
mmgenome2
Tools for extracting individual genomes from metagenomes
KasperSkytte's Repositories
KasperSkytte/ampvis2
Tools for visualising microbial community amplicon data
KasperSkytte/AutoTax
Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples
KasperSkytte/mmgenome2
Tools for extracting individual genomes from metagenomes
KasperSkytte/BASH_template
A simple BASH template script
KasperSkytte/ASV_pipeline
Bioinformatic pipeline for processing 16S rRNA amplicon data with exact Amplicon Sequence Variants (ASV's)
KasperSkytte/bioscripts
Miscellaneous bioinformatic helper scripts for various tasks
KasperSkytte/MC-prediction
Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks
KasperSkytte/ansible-anaconda
Ansible role for installing Anaconda
KasperSkytte/ansible-playbook-template
KasperSkytte/ansible-r
Ansible role to set up (the latest version of) R in Ubuntu systems
KasperSkytte/ansible-role-minknow-guppy-gpu
Ansible role to install and configure ONT MinKNOW with GPU support when basecalling using guppy
KasperSkytte/ansible-slurm
Ansible role for installing and managing the Slurm Workload Manager
KasperSkytte/bonito
A PyTorch Basecaller for Oxford Nanopore Reads
KasperSkytte/cafekapper.dk
Repo for the website
KasperSkytte/chezmoi
Manage your dotfiles across multiple diverse machines, securely.
KasperSkytte/docker-autocompose
Generate a docker-compose yaml definition from a running container
KasperSkytte/docker-guppy
KasperSkytte/docker-wireguard-pia
A Docker container for using Wireguard with PIA.
KasperSkytte/dotfiles
My dotfiles for Linux, managed using chezmoi.io
KasperSkytte/FEAST
Fast expectation maximization for microbial source tracking
KasperSkytte/git-crypt
Transparent file encryption in git
KasperSkytte/github-stats
Stats of my github profile
KasperSkytte/KaspbeeryPi
Log and analyze the fermentation of your beer. Reads gravity and temperature from a Tilt hydrometer and DS18B20 thermometers from the Raspberry Pi 1-wire interface. Will soon control a relay to set the temperature of a homemade kegerator.
KasperSkytte/KasperSkytte
GitHub profile
KasperSkytte/listviewer
R htmlwidget to view lists
KasperSkytte/makemerich
Telegram bot used for copying and entering signals from signal provider directly to MT4 and MT5 trading accounts with calculated lot sizes and profit/loss display
KasperSkytte/medaka
Sequence correction provided by ONT Research
KasperSkytte/server
A simple server for sending and receiving messages in real-time per WebSocket. (Includes a sleek web-ui)
KasperSkytte/setup_popos
Repo to bootstrap my working environment from a bare install
KasperSkytte/shiny
Easy interactive web applications with R