Kaziaa

Pinned Repositories

chembl_webresource_client
Official Python client for accessing ChEMBL API.
Language:Python10
dagdata
Data for the HarvardX courses: PH525x
Language:R10
data-science-learning-resources
A collection of data science and machine learning resources that I've found helpful (I only post what I've read!)
10
Fragmenstein
Scaffold hopping between bound compounds by stitching them together like a reanimated corpse.
Language:Python0 0 00
InteractiveComplexHeatmap
Make Interactive Complex Heatmaps
Language:R1 0 00
ivadomed
Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.
Language:Python1 0 00
labs
Rmd source files for the HarvardX series PH525x
Language:R1 0 00
Machine-Learning-in-90-days
Language:Jupyter Notebook10
ML_medbioinfo
Machine Learning in Medical Bioinformatics
Language:Jupyter Notebook10

Kaziaa's Repositories

Kaziaa/data-science-learning-resources
A collection of data science and machine learning resources that I've found helpful (I only post what I've read!)
10
Kaziaa/ML_medbioinfo
Machine Learning in Medical Bioinformatics
Language:Jupyter Notebook10
Kaziaa/practical_cheminformatics_tutorials
Practical Cheminformatics Tutorials
1
Kaziaa/3D-Generative-SBDD
💊 A 3D Generative Model for Structure-Based Drug Design (NeurIPS 2021)
Kaziaa/5minfame
Kaziaa/awesome-biological-image-analysis
A curated list of softwares, tools, pipelines, plugins etc. for image analysis related to biological questions.
Kaziaa/awesome-molecular-generation
Awesome papers related to generative molecular modeling and design.
Kaziaa/awesome-transformers-in-medical-imaging
A collection of resources on applications of Transformers in Medical Imaging.
Kaziaa/bash-handbook
:book: For those who wanna learn Bash
Kaziaa/chembl_targetprediction
Language:Python0 0
Kaziaa/docking
GNN enabled surrogate modeling for chemical docking
Language:Python0 0
Kaziaa/Generative-model
The official implementation of 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction (ICLR 2023)
Kaziaa/git-collaborative
Collaborative distributed version control lesson.
Kaziaa/GWASTutorial
GWAS Tutorial for Beginners
Kaziaa/jazzy
Efficient calculation of hydration free energies and hydrogen-bond strengths.
Kaziaa/Kaziaa
Kaziaa/Kinase-Cross-Dock
Benchmarking of cross-docking strategies for kinases
Kaziaa/kinase-kinoml
Structure-informed machine learning for kinase modeling
Kaziaa/Machine_learning
An Open Source Machine Learning Framework for Everyone
Kaziaa/Pharmacopjhore--MolSLEPA
Interpretable Fragment-based Molecule Design with Self-learning Entropic Population Annealing
Kaziaa/pqsar2cpd
pqsar2cpd is a deep learning algorithm for translation of activity profiles into novel molecules.
Kaziaa/PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Kaziaa/Python-to-Learn
Kaziaa/Python_project_based_learning
Curated list of project-based tutorials
Kaziaa/squidpy
Spatial Single Cell Analysis in Python
Kaziaa/teachopencadd
TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data
Kaziaa/Teal-Teal-Interactive-Exploratory-Data-Analysis-with-Shiny-Web-Applications
Exploratory Web Apps for Analyzing Clinical Trial Data
Kaziaa/tidymodules
An Object-Oriented approach to Shiny modules
Kaziaa/Toxicityprediciotn-mitochondrial-tox
Supporting information from "Predicting the Mitochondrial Toxicity of Small Molecules: Insights From Mechanistic Assays and Cell Painting Data" by Marina Garcia de Lomana, Paula Andrea Marin Zapata, and Floriane Montanari
Kaziaa/training-collection
Collection of bioinformatics training materials