KeelyDulmage

KeelyDulmage's Stars

• tidyomics/plyranges

  A grammar of genomic data transformation

  Language:R13918

• sihaohuanguc/Nanopore_psU

  Language:Python82

• nodesource/distributions

  NodeSource Node.js Binary Distributions

  Language:Shell13.5k3.1k

• kcleal/dysgu

  Toolkit for calling structural variants using short or long reads

  Language:Cython9412

• liumz93/PEM-Q

  a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ

  Language:Python76

• hhoeflin/hdf5r

  Language:C8023

• adnaniazi/tailfindr

  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.

  Language:R5217

• wdecoster/nanopack

  An overview of all nanopack tools

  Language:Python21015

• pinellolab/CRISPRitz

  Tool package to perform in-silico CRISPR analysis and assessment

  Language:Python219

• dewshr/GEG-SH

  Language:Python6

• STAR-Fusion/STAR-Fusion

  STAR-Fusion codebase

  Language:Perl23080

• SorenKarst/longread_umi

  Language:Shell7629

• wdecoster/nanostat

  Create statistic summary of an Oxford Nanopore read dataset

  Language:Python9111

• nanoporetech/bonito

  A PyTorch Basecaller for Oxford Nanopore Reads

  Language:Python394121

• Illumina/ExpansionHunter

  A tool for estimating repeat sizes

  Language:C++17851

• google-deepmind/alphafold

  Open source code for AlphaFold.

  Language:Python12.6k2.2k

• nanoporetech/rerio

  Research release basecalling models and configurations

  Language:Python1019

• nanoporetech/megalodon

  Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

  Language:Python19730

• ChaissonLab/LRA

  Long read aligner

  Language:C++1128

• SR-Martin/alvis

  Language:Java193

• dpryan79/SE-MEI

  Tools for finding mobile element insertions from single-end datasets

  Language:C2316

• Adrian-Cantu/AAVengeR

  Language:R11

• jthomasmock/penguin-project

  Language:HTML8453

• galanisl/loh_scripts

  Scripts for the analysis of low-pass WGS, deep targeted sequencing and transcriptome data from control and OCT4 CRISPR-Cas9-targeted early human embryos

  Language:R61

• rstudio/DT

  R Interface to the jQuery Plug-in DataTables

  Language:JavaScript599180

• taiyunkim/scClustBench

  Impacts of similarity metrics on scRNA-seq

  Language:C++52

• bioinfomaticsCSU/deepsignal

  Detecting methylation using signal-level features from Nanopore sequencing reads

  Language:Python11121

• swsoyee/r3dmol

  🧬 An R package for visualizing molecular data in 3D

  Language:JavaScript884

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.3k910

• nanoporetech/pipeline-umi-amplicon

  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers

  Language:Python2911