KennethEnevoldsen/snp-compression

Issues

• Finalize SNPNet (todolist from meeting with doug) - see snpnet project

  #22 opened 3 years ago by KennethEnevoldsen
  0

• SNPNet finalize

  #21 opened 3 years ago by KennethEnevoldsen
  0

• Grid search on activation function

  #20 opened 3 years ago by KennethEnevoldsen
  0

• Does a model trained on chr. 6 generalise to other chromosomes?

  #19 opened 3 years ago by KennethEnevoldsen
  0

• refactor to one training script with a function for building the neural network

  #14 opened 3 years ago by KennethEnevoldsen
  0

• reduce validation to 10 k

  #13 opened 3 years ago by KennethEnevoldsen
  0

• prepare presentation of conv. autoencoder

  #15 opened 3 years ago by KennethEnevoldsen
  1

• transition away from changing thing in the script

  #17 opened 3 years ago by KennethEnevoldsen
  2

• combine Wandb config with Pytorch config

  #18 opened 3 years ago by KennethEnevoldsen
  1

• Price of GPUs (scaling and type)

  #12 opened 3 years ago by KennethEnevoldsen
  3

• Improve speed

  #8 opened 3 years ago by KennethEnevoldsen
  0

• Test out alternative input formats

  #5 opened 3 years ago by KennethEnevoldsen
  0

• deal with NAs properly

  #11 opened 3 years ago by KennethEnevoldsen
  1

• Add metric: correlation with correct

  #9 opened 3 years ago by KennethEnevoldsen
  2

• Train initial model

  #3 opened 3 years ago by KennethEnevoldsen
  0

• run performance test on limited set

  #16 opened 3 years ago by KennethEnevoldsen
  0

• fix GPU utilisation

  #6 opened 3 years ago by KennethEnevoldsen
  0

• Add Metric: Dosage

  #10 opened 3 years ago by KennethEnevoldsen
  1

• Add speed test on plink -> tensor

  #2 opened 3 years ago by KennethEnevoldsen
  0

• decoder size

  #7 opened 3 years ago by KennethEnevoldsen
  2

• setup sweep

  #4 opened 3 years ago by KennethEnevoldsen
  0

• Add metrics

  #1 opened 3 years ago by KennethEnevoldsen
  0