KennethEnevoldsen/snp-transformer

Issues

• website for example documentation is not avaible.

  #42 opened 10 months ago by BigGiAnts
  2

• 100 SNPs debugging

  #38 opened a year ago by KennethEnevoldsen
  1

• debugging: check that models can overfit to an individual

  #37 opened a year ago by KennethEnevoldsen
  1

• debugging: Is individuals representations unique

  #36 opened a year ago by KennethEnevoldsen
  1

• ideas to try:

  #34 opened a year ago by KennethEnevoldsen
  0

• Experiment med at overfit på en batch

  #33 opened a year ago by KennethEnevoldsen
  2

• fine-tuning icd 100 model

  #30 opened a year ago by KennethEnevoldsen
  0

• Minor allele might be set wrong

  #26 opened a year ago by KennethEnevoldsen
  1

• Add fine-tuning task (based on a pre-trained model)

  #23 opened a year ago by KennethEnevoldsen
  0

• Add embeddings information

  #5 opened a year ago by KennethEnevoldsen
  2

• Add model loading (and saving)

  #8 opened a year ago by KennethEnevoldsen
  0

• create train test split

  #9 opened a year ago by KennethEnevoldsen
  1

• Calculate max/mean number of snps for any individual

  #25 opened a year ago by KennethEnevoldsen
  1

• Check naive models for SNPs

  #24 opened a year ago by KennethEnevoldsen
  1

• Ensure padding it passed as attention mask

  #19 opened a year ago by KennethEnevoldsen
  0

• ensure batch first

  #15 opened a year ago by KennethEnevoldsen
  1

• scale up sequence length

  #18 opened a year ago by KennethEnevoldsen
  0

• scale up model size to bert-base

  #17 opened a year ago by KennethEnevoldsen
  0

• Add MLM Accuracy

  #7 opened a year ago by KennethEnevoldsen
  1

• ensure that masked_lm is not always -1

  #12 opened a year ago by KennethEnevoldsen
  1

• add LR scheduler

  #14 opened a year ago by KennethEnevoldsen
  0

• add long range support

  #13 opened a year ago by KennethEnevoldsen
  0