KennthShang
PostDoc [Chinese University of Hong Kong]: #Bioinformatics; #Deep_learning; #Naive_Coder. Thanks for using our tools
Chinese University of Hong KongHong Kong
Pinned Repositories
CHEER
Model for taxonomy classification
CHERRY
Host prediction for phages
HostG
Graph convolutional neural network for host prediction
PhaBOX
Local version of the virus identification and analysis web server (tool set)
PhaGCN
GCN classifier for phage taxanomy classification
PhaGCN2.0
PhaGCN_newICTV
Update model for ICTV2022
PhaMer
Accurate identification of bacteriophages from metagenomic data using Transformer
PhaTYP
PhaTYP: Predicting lifestyle for bacteriophages using BERT
PhaVIP
Phage virion protein classifier
KennthShang's Repositories
KennthShang/PhaBOX
Local version of the virus identification and analysis web server (tool set)
KennthShang/PhaGCN
GCN classifier for phage taxanomy classification
KennthShang/PhaGCN2.0
KennthShang/CHERRY
Host prediction for phages
KennthShang/PhaMer
Accurate identification of bacteriophages from metagenomic data using Transformer
KennthShang/HostG
Graph convolutional neural network for host prediction
KennthShang/CHEER
Model for taxonomy classification
KennthShang/PhaTYP
PhaTYP: Predicting lifestyle for bacteriophages using BERT
KennthShang/PhaVIP
Phage virion protein classifier
KennthShang/PhaGCN_newICTV
Update model for ICTV2022
KennthShang/MTDP
Multi-Teacher Distillation for Protein embedding
KennthShang/CHERRY_MAGs
MAG version of CHERRY
KennthShang/CHERRY_crispr_DATABASE
Database version of CHERRY CRISPR
KennthShang/CHERRY_crispr_MAG
Predict phage-bacteria interaction using CRISPRs
KennthShang/alphafold_non_docker
AlphaFold2 non-docker setup
KennthShang/bioconda-recipes
Conda recipes for the bioconda channel.
KennthShang/database
KennthShang/dataset
KennthShang/DeepVirFinder
Identifying viruses from metagenomic data by deep learning
KennthShang/github_files
KennthShang/gputil
A Python module for getting the GPU status from NVIDA GPUs using nvidia-smi programmically in Python
KennthShang/homework
KennthShang/KennthShang.github.io
Personal webpage
KennthShang/leetcode-master
《代码随想录》LeetCode 刷题攻略：200道经典题目刷题顺序，共60w字的详细图解，视频难点剖析，50余张思维导图，支持C++，Java，Python，Go，JavaScript等多语言版本，从此算法学习不再迷茫！🔥🔥 来看看，你会发现相见恨晚！🚀
KennthShang/Machine-Learning-Collection
A resource for learning about ML, DL, PyTorch and TensorFlow. Feedback always appreciated :)
KennthShang/PYlogeny
A tool for conversion from assorted NCBI Accessions to NCBI Taxonomy IDs
KennthShang/RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
KennthShang/seeker
KennthShang/TarGene
KennthShang/ViFi
Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.