CElegans

In 'ARD':

Single ARD: Implements regular ARD on toy data

Group ARD: Implements Group ARD on toy data

In 'Data Analysis':

AnimateCenterline: Generate animation of centerline across all time

Eigenworms: Computes PCA on worm centerline data

GCaMPSlopeResidualDeconvolve: GCaMP and RFP signal: Read in data, discard NaN values, then calculate slopes of different neurons, residuals, and deconvolve to get neural activity

GFPSlopeResidualDeconvolve: GFP and RFP signal: Read in data, discard NaN values, then calculate slopes of different neurons, residuals, and deconvolve to get neural activity

In 'Data Processing':

Consolidate_Information: pulls together all the different kinds of data provided by the Leifer lab to create a single .npz files for each individiual worms containing all its relevant info. Results stored in 'SharedData' folder

ComputeCenterlineAngles: computes centerline angles and stores those, in addition to their projections onto eig_basis and all data stored in Consolidate_Information, into a new file called WormAngles_.npz in the 'SharedData' folder

In 'Images':

relevant images we want to save

In 'Neuron Simulation':

Full_Neuron_Simulation: Generates neuronal activity from toy network and tries to recover connection weights with Group ARD

In 'SharedData':

Reserved for 'final' data, i.e. data that should not be modified, only copied and used for further analysis
Current holds the output of Consolidated_Information which consolidates all the information about each of our different worms. Thus, there are three .npz files for each of our three worms.

Kevin-Sean-Chen/WormMotion