Pinned Repositories
ATAC-seq-Project
bonito
A PyTorch Basecaller for Oxford Nanopore Reads
cwDTW
Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals
Decision-Tree-Implementation
deepsignal
Detecting methylation using signal-level features from Nanopore sequencing reads
dorado
Oxford Nanopore's Basecaller
fast5mod
Extract modifed base call information from Guppy Fast5 files.
fulgent
METEORE
Automatic DNA methylation detection from nanopore tools and their consensus model
MethylResolver
Robust method for deconvolving bulk tissue methylation data using least trimmed squares (LTS) regression
Kh0iHuynh's Repositories
Kh0iHuynh/Pembrolizumab_methylation_rnaseq
Kh0iHuynh/bonito
A PyTorch Basecaller for Oxford Nanopore Reads
Kh0iHuynh/fulgent
Kh0iHuynh/python-machine-learning
Repository to store sample python programs for python learning
Kh0iHuynh/sns
Analysis pipelines for genomic sequencing data
Kh0iHuynh/SquiggleKit
SquiggleKit: A toolkit for manipulating nanopore signal data
Kh0iHuynh/nanopore_script
Kh0iHuynh/dorado
Oxford Nanopore's Basecaller
Kh0iHuynh/nanopolish
Signal-level algorithms for MinION data
Kh0iHuynh/Nanopore_modification_inference
Graph Convolution based model for de novo identification of nucleotide modifications
Kh0iHuynh/deepsignal
Detecting methylation using signal-level features from Nanopore sequencing reads
Kh0iHuynh/METEORE
Automatic DNA methylation detection from nanopore tools and their consensus model
Kh0iHuynh/Decision-Tree-Implementation
Kh0iHuynh/ATAC-seq-Project
Kh0iHuynh/vbz_compression
VBZ compression plugin for nanopore signal data
Kh0iHuynh/fast5mod
Extract modifed base call information from Guppy Fast5 files.
Kh0iHuynh/sigmap
A streaming method for mapping nanopore raw signals
Kh0iHuynh/MultiNanopolish
Accelaration of Nanopolish algorithm
Kh0iHuynh/MethylResolver
Robust method for deconvolving bulk tissue methylation data using least trimmed squares (LTS) regression
Kh0iHuynh/cwDTW
Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals