Knowledge-Graph-Hub/kg-covid-19

Refresh CORD-19 annotations with latest scibite annotations

cmungall opened this issue · 2 comments

https://github.com/SciBiteLabs/CORD19/issues/14

Note they use PRO as the vocabulary. We can ingest the PRO file... but it may be easier just to add the PRO xrefs into our curated gpi file

@cmungall @deepakunni3 does SciBite definitely use PRO as their vocabulary for SARS-CoV-2 genes? I can't confirm this - for example, I can't seem to find for example the PRO ID for Spike protein:
https://proconsortium.org/app/entry/PR%3A000050269/
in the transformed data from SciBite version 1.5:

$ grep 000050269 data/transformed/SciBite-CORD-19/nodes.tsv  data/transformed/SciBite-CORD-19/edges.tsv
$

Closed by #263