Pinned Repositories
kg-cookiecutter
A cookiecutter template for KG generation.
kg-covid-19
An instance of KG Hub to produce a knowledge graph for COVID-19 response.
kg-idg
A Knowledge Graph to Illuminate the Druggable Genome
kg-microbe
kg-obo
A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
kg-phenio
A Graph for experiments doing ML on ontologies.
knowledge-graph-hub-support
Issues, support, and discussion for KG-Hub. Covers tools, infrastructure, and graph projects.
neat-ml
Network Embedding All the Things
semsim
Write out file with semantic similarity of all pairs of ontology terms in a given ontology
sri-reference-kg
Repo for generating the SRI Reference KG
Knowledge-Graph-Hub's Repositories
Knowledge-Graph-Hub/kg-covid-19
An instance of KG Hub to produce a knowledge graph for COVID-19 response.
Knowledge-Graph-Hub/kg-obo
A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
Knowledge-Graph-Hub/neat-ml
Network Embedding All the Things
Knowledge-Graph-Hub/kg-microbe
Knowledge-Graph-Hub/kg-idg
A Knowledge Graph to Illuminate the Druggable Genome
Knowledge-Graph-Hub/kg-phenio
A Graph for experiments doing ML on ontologies.
Knowledge-Graph-Hub/kg-enp
KG-ENP: a knowledge graph for experimental natural products, based off ENPKG
Knowledge-Graph-Hub/knowledge-graph-hub-support
Issues, support, and discussion for KG-Hub. Covers tools, infrastructure, and graph projects.
Knowledge-Graph-Hub/semsim
Write out file with semantic similarity of all pairs of ontology terms in a given ontology
Knowledge-Graph-Hub/sri-reference-kg
Repo for generating the SRI Reference KG
Knowledge-Graph-Hub/eco-kg
Knowledge-Graph-Hub/kg-example
Example repository for KG-Hub projects. Provides examples for downloading sources, transforming them, and merging them into knowledge graphs.
Knowledge-Graph-Hub/monarch-embedding
Knowledge-Graph-Hub/universalizer
The KG-Hub Universalizer provides functions for knowledge graph cleanup and identifier normalization.
Knowledge-Graph-Hub/automate-pheno-comparisons
Jenkins-based automation of phenotype semantic similarity on PHENIO with Semsimian.
Knowledge-Graph-Hub/kg-cookiecutter
A cookiecutter template for KG generation.
Knowledge-Graph-Hub/knowledge-graph-hub.github.io
Knowledge-Graph-Hub/multi-indexer
A utility for creating sets of templated indexes for local or remote directories.
Knowledge-Graph-Hub/kg-bacdive
Knowledge graph construction for BacDive data
Knowledge-Graph-Hub/kg-ibd
Knowledge-Graph-Hub/kg-registry
A simple registry for KGHub projects
Knowledge-Graph-Hub/neat-ml-schema
A repository that contains the LinkML model for specifying graph ML pipelines
Knowledge-Graph-Hub/.github
Welcome to KG-Hub
Knowledge-Graph-Hub/biolink_model_category_hierarchy
Simple code to make a graph-like hierachy for biolink model categories
Knowledge-Graph-Hub/kegg-kg-converter
A simple data ingested using url constructors
Knowledge-Graph-Hub/kg-covid-19-dashboard
Dashboard for KG-COVID-19
Knowledge-Graph-Hub/kg-envpolyreg
Knowledge-Graph-Hub/kg-hub-dashboard
Dashboard visualizations for KG-Hub projects.
Knowledge-Graph-Hub/NEAT-kghub-scheduler
Scheduling utility for starting NEAT jobs for KG-Hub resources.
Knowledge-Graph-Hub/uniprot2s3