BioMakie
Installation and Setup
This package contains visual utilities for biodata, mostly proteins.
julia> ] add BioMakie
julia> using BioMakie
Basic GLMakie visualizations are implemented but WebGL is under construction.
Usage
To view a PDB structure, use the viewstruc
function with a PDB ID or BioStructures protein structure.
julia> struc = retrievepdb("2vb1", dir = "data\\") |> Node
julia> sv = viewstruc(struc)
julia> struc = read("data\\2vb1_m1.pdb", BioStructures.PDB) |> Node
julia> sv = viewstruc(struc)
To view a multiple sequence alignment, use the viewmsa
function with a Pfam ID or fasta file.
julia> mv = viewmsa("PF00062")
julia> mv = viewmsa("data/fasta1.fas")