Kobie-Kirven's Stars
nextflow-io/nextflow
A DSL for data-driven computational pipelines
Fraternalilab/POPSlegacy
POPS*: solvent accessible surface areas (SASAs) of proteins and nucleic acids
cooplab/popgen-notes
Population genetics notes
Weeks-UNC/RNAvigate
Very flexible tools for plotting and analyzing all kinds of RNA structure data
pylelab/RSCanner
sfindlay11/iMAPS
software for Findlay et al. 2023 "Quantifying negative selection in human 3ʹ UTRs uncovers constrained targets of RNA-binding proteins"
resume/resume.github.com
Resumes generated using the GitHub informations
snakemake-workflows/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
The-Bevilacqua-Lab/DockerRNA
Docker files for containerizing many bioinformatics tools for working with RNA-related data
snakemake/snakemake-github-action
A Github action for running a Snakemake workflow
The-Bevilacqua-Lab/variantfoldrna
A Snakemake Pipeline for RiboSNitch Prediction
Wytamma/snk
Snakemake workflow management system and CLI generation tool
jdblischak/smk-simple-slurm
A simple Snakemake profile for Slurm without --cluster-config
mkrapp/cookiecutter-reproducible-science
boilerplate for reproducible and transparent science
ncherric/Iliad
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
jxbz/agd
Automatic gradient descent
netsiphd/netrd
A library for network {reconstruction, distances, dynamics}
francesccoll/powerbacgwas
PowerBacGWAS: Power calculations for Bacterial GWAS
anntzer/defopt
Effortless argument parser
latchbio/latch
a python bioinformatics framework
AstroJacobLi/smplotlib
Matplotlib template for SuperMongo style 🔭
gpertea/gffread
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
DasLab/draw_rna
Draw RNA secondary structures in python.
ksamuk/pixy
Software for painlessly estimating average nucleotide diversity within and between populations
ridgelab/JustOrthologs
snakemake/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
mgalardini/pyseer
SEER, reimplemented in python 🐍🔮
igvteam/igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
bihealth/vcfpy
Python 3 library with good support for both reading and writing VCF
JPSieg/meltR.a.paper