KrishnamurthyLab/spatialEpisim.foundation

Issues

• Cumulative vaccinations appears incorrect

  #31 opened 3 months ago
  0

• Exposed compartment jumps significantly in value

  #30 opened 3 months ago
  8

• Exposed compartment exhibits a possible, strange edge effect

  #29 opened 3 months ago
  0

• `castSeedDataQueensNeighbourhood` cannot handle situation with a single infection

  #28 opened 3 months ago
  2

• Resample population

  #27 opened 2 months ago
  1

• Don't use the identifiers forecast and prior at the same time to refer to different things

  #26 opened 3 months ago
  0

• Infected compartment spatRaster layer is severely bugged

  #25 opened 3 months ago
  9

• Exposed and Infected compartments are orders of magnitude higher compared to original code

  #24 opened 3 months ago
  14

• Cumulative exposures are calculated incorrectly

  #23 opened 3 months ago
  1

• Population sum total differences exist between original codebase and foundation

  #22 opened 2 months ago
  5

• Lead or lag for new* variables?

  #21 opened 3 months ago
  1

• Implement SEI-type models other than SEIRD or SVEIRD

  #20 opened 3 months ago
  0

• R CMD check is slow because examples are too large and long-running

  #19 opened 3 months ago
  0

• Documented, installed `terra::add<-` method not found during runtime execution

  #18 opened 3 months ago
  1

• Test fails due to unsupported vector type in `array.c` during R CMD CHECK

  #17 opened 3 months ago
  1

• Implement the desired output columns

  #16 opened 3 months ago
  0

• Population (N), Susceptible (S), Exposed (E), and Infected (I) compartments are bungled by data assimilation

  #15 opened 3 months ago
  0

• Cannot complete test of original Q matrix code with one neighbourhood

  #14 opened 3 months ago
  0

• "missing value where TRUE/FALSE needed" when testing transmission likelihood matrix during normal usage

  #13 opened 3 months ago
  1

• Callback `cli::cli_progress_bar` doesn't appear to function

  #12 opened 3 months ago
  0

• `castSeedDataQueensNeighbourhood` results in mostly empty SpatRasters

  #11 opened 3 months ago
  0

• `originalCodeResults` expression in Q-matrix test requires data not available in package

  #10 opened 3 months ago
  0

• `getCountrySubregions.SpatVector` does not support acquiring the vector for all provinces, cropping is mandator

  #9 opened 4 months ago
  1

• Edit comment on `spit` and `SpatRaster` pun

  #8 opened 4 months ago
  1

• DESCRIPTION contains incorrect URLS

  #7 opened 2 months ago
  0

• Susceptible is zero at the beginning of a simulation, and then increases over time in early timesteps

  #6 opened 3 months ago
  1

• Year of the output date is incorrect in results

  #5 opened 3 months ago
  2

• The user option `spatialEpisim.foundation.datapath` for storing Persistent User Data is not canonical

  #4 opened 4 months ago
  1

• `growth` is `NA`

  #3 opened 4 months ago
  0

• `Error: [focal] not a meanigful window` reported by `terra::focal` in `transmissionLikelihoodWeightings`

  #2 opened 4 months ago
  3

• `aggregationFactor` is described as a number of kilometres, but aggregation is cell-based in `terra::aggregate`

  #1 opened 4 months ago
  5