Pinned Repositories
SRA2019
scripts to replicate "Sequencing Disparity in the Genomic Era" (https://doi.org/10.1093/molbev/msz117)
KyleTDavid.github.io
Personal Website
DeepSeqProt
FrogPloidy2020
scripts replicate "Spatial Proximity Between Polyploids Across South American Frog Genera" (https://doi.org/10.1111/jbi.14067)
GlobalPloidy2022
Scripts to replicate "Global Gradients in the Distribution of Animal Polyploids"
OrthologConjecture2019
scripts to replicate "Patterns of Gene Evolution Following Duplications and Speciations in Vertebrates" (https://doi.org/10.7717/peerj.8813)
OrthoSim
codon simulator across speciation and duplication events, suspended
YeastMacroecology2023
scripts to replicate unpublished yeast macroecology project
GeneRax
TIAMMAt
Revision of Pfam domain profile HMMs to improve capture of homologous domains in underrepresented/non-model species.
KyleTDavid's Repositories
KyleTDavid/KyleTDavid.github.io
Personal Website
KyleTDavid/YeastMacroecology2023
scripts to replicate unpublished yeast macroecology project
KyleTDavid/GlobalPloidy2022
Scripts to replicate "Global Gradients in the Distribution of Animal Polyploids"
KyleTDavid/DeepSeqProt
KyleTDavid/FrogPloidy2020
scripts replicate "Spatial Proximity Between Polyploids Across South American Frog Genera" (https://doi.org/10.1111/jbi.14067)
KyleTDavid/OrthologConjecture2019
scripts to replicate "Patterns of Gene Evolution Following Duplications and Speciations in Vertebrates" (https://doi.org/10.7717/peerj.8813)
KyleTDavid/SRA2019
scripts to replicate "Sequencing Disparity in the Genomic Era" (https://doi.org/10.1093/molbev/msz117)
KyleTDavid/OrthoSim
codon simulator across speciation and duplication events, suspended