Pinned Repositories
ADEPT
ADEPT is the only tool to date that dynamically assesses errors within reads by comparing position-specific and neighboring base quality scores with the distribution for the dataset being analyzed.
assay_validation
This is a web-app and workflow for computationally screening PCR-based assays
EDGE
EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
FaQCs
Quality Control of Next Generation Sequencing Data
GOTTCHA
Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:
KWAGE
Ultra-fast, Bloom filter-based sequence search
MeGAMerge
MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)
PanGIA
PCRamp
Software for designing multiplex-compatible, PCR-based enrichment assays
PhaME
Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to construct a phylogenetic tree. Provides evolutionary analyses (genes under positive selection) using CDS SNPs.
LANL-Bioinformatics's Repositories
LANL-Bioinformatics/EDGE
EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
LANL-Bioinformatics/PhaME
Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to construct a phylogenetic tree. Provides evolutionary analyses (genes under positive selection) using CDS SNPs.
LANL-Bioinformatics/FaQCs
Quality Control of Next Generation Sequencing Data
LANL-Bioinformatics/GOTTCHA
Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:
LANL-Bioinformatics/MeGAMerge
MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)
LANL-Bioinformatics/ADEPT
ADEPT is the only tool to date that dynamically assesses errors within reads by comparing position-specific and neighboring base quality scores with the distribution for the dataset being analyzed.
LANL-Bioinformatics/PanGIA
LANL-Bioinformatics/KWAGE
Ultra-fast, Bloom filter-based sequence search
LANL-Bioinformatics/PCRamp
Software for designing multiplex-compatible, PCR-based enrichment assays
LANL-Bioinformatics/assay_validation
This is a web-app and workflow for computationally screening PCR-based assays
LANL-Bioinformatics/normalCowboy
LANL-Bioinformatics/scRNA-seq
LANL-Bioinformatics/synthetic_transkingdom_data
LANL-Bioinformatics/ramifi
Recombinant And Mixed-Infection Finder for SARS-CoV-2
LANL-Bioinformatics/EDGE_workflows
LANL-Bioinformatics/DETEQT
Diagnostic targeted sequencing adjudication
LANL-Bioinformatics/gottcha2-custom-db
Generates custom GOTTCHA2 database from a set of genomes
LANL-Bioinformatics/kbase-gottcha2
GOTTCHA2 KBase app
LANL-Bioinformatics/kbase-metaphlan2
KBase wrapper for MetaPhAn2
LANL-Bioinformatics/Lo-et-al-Bioinformatics-EC-19-data
LANL-Bioinformatics/metamer
Cluster shotgun sequencing samples
LANL-Bioinformatics/NASA_GeneLab_workflows
LANL-Bioinformatics/nmdc-schema
This repository contains the LinkML specification for the NMDC schema and the artifacts generated by LinkML.
LANL-Bioinformatics/phame-app
LANL-Bioinformatics/piret
Pythonic PiReT
LANL-Bioinformatics/rMoore
Moore genome citation tracker