LASeeker
I am a scientist in the Quake lab at Stanford interested in healthy aging and resilience. Also: Spatial transcriptomics, Tabula Sapiens, telomeres, killifish!
Stanford UniversityPalo Alto, California
Pinned Repositories
Luise_Seeker_Human_WM_Glia
SCEVAN
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
Bovine-telomere-dynamics
contains data and code for the analysis of the paper "bovine telomere dynamics and the association of telomere length with productive lifespan"
datasharing
The Leek group guide to data sharing
DNAextractionTelomeres
Data for: Seeker et al. 2016, PLOS ONE, "Method specific calibration corrects for DNA extraction method effects on relative telomere length measurements by quantitative PCR"
MyLabProtocols
Protocols I use in the lab
RandomRegressionAnalysisTelomeres
This repository contains the data I used for our papar "Longitudinal changes in telomere length and associated genetic parameters in dairy cattle analysed using random regression models"
RNAseqEr
Fast and reproducible sc/snRNAseq data analysis
TelomereChangeInDairyCattle
This repo contains data and code discussed in Seeker et al. 2021, Scientific Reports
TelomereChangeInDairyCattle_private
LASeeker's Repositories
LASeeker/Bovine-telomere-dynamics
contains data and code for the analysis of the paper "bovine telomere dynamics and the association of telomere length with productive lifespan"
LASeeker/datasharing
The Leek group guide to data sharing
LASeeker/DNAextractionTelomeres
Data for: Seeker et al. 2016, PLOS ONE, "Method specific calibration corrects for DNA extraction method effects on relative telomere length measurements by quantitative PCR"
LASeeker/MyLabProtocols
Protocols I use in the lab
LASeeker/RandomRegressionAnalysisTelomeres
This repository contains the data I used for our papar "Longitudinal changes in telomere length and associated genetic parameters in dairy cattle analysed using random regression models"
LASeeker/RNAseqEr
Fast and reproducible sc/snRNAseq data analysis
LASeeker/TelomereChangeInDairyCattle
This repo contains data and code discussed in Seeker et al. 2021, Scientific Reports
LASeeker/TelomereChangeInDairyCattle_private