Pinned Repositories
BedBreaker
A format converter from BreakDancer/XHMM output to BED
bioperl-hmmer3
BioPerl modules for HMMER3
BLAST_to_BED
Convert BLAST XML alignments to BED format
convert2bed
Convert common binary and text genomic formats to BED
fasta_utilities
A collection of scripts developed to interact with fasta, fastq and sam/bam files.
gff2gtf
AWK script for conversion of GFF files to GTF.
gff3-calculate
calculate mRNA length from gff3 file
gread
Fast reading and processing of genome annotation and read format files such as GTF, GFF, BED, BAM etc.
HMMER-DB
A program for searching, extracting and storing protein sequences that match specific Hidden Markov Models created by HMMER.
HMMer-scripts-
Scripts that deal with HMMer output
LI-Mingzhi's Repositories
LI-Mingzhi/BedBreaker
A format converter from BreakDancer/XHMM output to BED
LI-Mingzhi/bioperl-hmmer3
BioPerl modules for HMMER3
LI-Mingzhi/BLAST_to_BED
Convert BLAST XML alignments to BED format
LI-Mingzhi/convert2bed
Convert common binary and text genomic formats to BED
LI-Mingzhi/fasta_utilities
A collection of scripts developed to interact with fasta, fastq and sam/bam files.
LI-Mingzhi/gff2gtf
AWK script for conversion of GFF files to GTF.
LI-Mingzhi/gff3-calculate
calculate mRNA length from gff3 file
LI-Mingzhi/gread
Fast reading and processing of genome annotation and read format files such as GTF, GFF, BED, BAM etc.
LI-Mingzhi/HMMER-DB
A program for searching, extracting and storing protein sequences that match specific Hidden Markov Models created by HMMER.
LI-Mingzhi/HMMer-scripts-
Scripts that deal with HMMer output
LI-Mingzhi/IntronGTF
Make a Intron GTF file from a bed
LI-Mingzhi/orthomcl-pipeline
Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/
LI-Mingzhi/pca
Principle Component Analysis in Python
LI-Mingzhi/profillic-hmmer
Modified versions of HMMER 3 programs to implement interoperability with galosh profiles (as generated by profillic).
LI-Mingzhi/RefGeneTxtToBed
Convert UCSC refGene.txt to bed format
LI-Mingzhi/rsgcc
:exclamation: This is a read-only mirror of the CRAN R package repository. rsgcc — Gini methodology-based correlation and clustering analysis of<U+000a>microarray and RNA-Seq gene expression data. Homepage: http://www.cmbb.arizona.edu/
LI-Mingzhi/SMoD
SequenceMotifDecomposer (SMoD) is a motif finder algorithm.
LI-Mingzhi/TarHunterL
Plant miRNA target and target mimics prediction tool