MISe

This is the official repository of the software MISe - Multidimensional Image Segmentation. MISe offers a suite of image segmentation and analysis algorithms developed using the Image Foresting Transform (IFT) framework, coupled with image visualization and volume rendering tools. Living up to its name, MISe accepts the workload with various 2D, 3D, and 4D images.

Installation Guide

This tutorial was tested on Ubuntu 22.04. Ensure you have libift compiled on your machine. The following packages are necessary to build the Qt user interfaces:

apt install qt6-base-dev libqt6charts6-dev

Next, you are all set to compile MISe:

cd PATH_FOR_MISE_SOURCE_CODE
qmake6 IFT_DIR="PATH_FOR_LIBIFT_DIR"
make

Citation

If you find this software useful for your research, please cite it as follows.

@software{mise,
  author       = {Ilan Francisco da Silva and
                  Taylla Milena Theodoro and
                  Azael M Sousa and
                  Alexandre Xavier Falcão},
  title        = {{LIDS-UNICAMP/MISe: MISe: Multidimensional Image 
                   Segmentation}},
  month        = aug,
  year         = 2023,
  publisher    = {Zenodo},
  version      = {v0.0.1-alpha},
  doi          = {10.5281/zenodo.8280035},
  url          = {https://doi.org/10.5281/zenodo.8280035}
}

@article{falcao2004image,
  title={The image foresting transform: Theory, algorithms, and applications},
  author={Falcao, Alexandre X and Stolfi, Jorge and de Alencar Lotufo, Roberto},
  journal={IEEE transactions on pattern analysis and machine intelligence},
  volume={26},
  number={1},
  pages={19--29},
  year={2004},
  publisher={IEEE}
}